View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_94 (Length: 251)
Name: NF1249_low_94
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_94 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 49710825 - 49711068
Alignment:
| Q |
8 |
agaaaagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49710825 |
agaaaagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagt |
49710924 |
T |
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| Q |
108 |
cagatgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49710925 |
cagatgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccaca |
49711024 |
T |
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| Q |
208 |
ctggatttacaagagtcttgaattgaatcaggatcttggactca |
251 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49711025 |
ctggatttacaagcgtcttgaattgaatcaggatcttggactca |
49711068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 49683215 - 49683458
Alignment:
| Q |
8 |
agaaaagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| || | |
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| T |
49683215 |
agaaaagaaagcattgtatcaatatttggtgcaagggggacaccaggatatattgctccagagctgttctctagacattttggtggggtgtcacacaaat |
49683314 |
T |
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| Q |
108 |
cagatgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccaca |
207 |
Q |
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| T |
49683315 |
cagatgtctacagttatggaatgatggttttagaaatggttggtcgaagaaagaacatcaaagttgaagtggattgttctagcgagttatattttccaca |
49683414 |
T |
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| Q |
208 |
ctggatttacaagagtcttgaattgaatcaggatcttggactca |
251 |
Q |
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| T |
49683415 |
ttggatctacaagcgtcttgaattgaatcaagatcttggactca |
49683458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 49714466 - 49714702
Alignment:
| Q |
8 |
agaaaagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagt |
107 |
Q |
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|||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |
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| T |
49714466 |
agaaaagaaagcattgtatccatatttgttgcg-ggggaacaccaggatatattgctccagagttgttctccagaaattttgacggggtgtcacataaat |
49714564 |
T |
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| Q |
108 |
cagatgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccaca |
207 |
Q |
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||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49714565 |
cagatgtttatagttatggaatgatggttttagaaatggttggccgaagaaagaacattaaggttgaagttgattgttccagcgagttatattttccaca |
49714664 |
T |
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| Q |
208 |
ctggatttacaagagtcttgaattgaatcaggatcttg |
245 |
Q |
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| T |
49714665 |
ctggatttacaagcgtcttgaattgaatcaggatcttg |
49714702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 49215487 - 49215723
Alignment:
| Q |
8 |
agaaaagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagt |
107 |
Q |
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||||||||||| |||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | |
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| T |
49215487 |
agaaaagaaagtattgcatccgtatttggcgcaagaggaacgccaggatatattgctccagagttgttctccagacattttggtggggtgtcacataaat |
49215586 |
T |
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| Q |
108 |
cagatgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccaca |
207 |
Q |
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||||||| || ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
49215587 |
cagatgtttatagttatggaatgatggttttagaaatggtttgtcgaagaaagaacattaaggttgaagttgattg-------gagtaatattttccaca |
49215679 |
T |
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| Q |
208 |
ctggatttacaagagtcttgaattgaatcaggatcttggactca |
251 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49215680 |
ctggatttacaagcgtcttgaattgaatcaggatcttggactca |
49215723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 49688121 - 49688357
Alignment:
| Q |
8 |
agaaaagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagt |
107 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| | |
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| T |
49688121 |
agaaaagaaagcattgtatccatatttggtgcaaggggaacgccaggatat--tgctccagagttgttctcccgaaattttggtggggtgtcccataaat |
49688218 |
T |
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| Q |
108 |
cagatgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccaca |
207 |
Q |
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|||||||||||||||| ||||||||||| | |||||||||| |||||||||||| || |||||||| |||||||||||||| |||||||||||||| |
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| T |
49688219 |
cagatgtctacagttatggaatgatggt-----aaatggttggtcaaagaaagaacatcaaagttgaagtggattgttctagcgatttatattttccaca |
49688313 |
T |
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| Q |
208 |
ctggatttacaagagtcttgaattgaatcaggatcttggactca |
251 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
49688314 |
ttggatttacaagcgtcttgaattgaatcaagatcttggactca |
49688357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 49725241 - 49725479
Alignment:
| Q |
8 |
agaaaagaaagcattgtatcaatatttggtgcaaggggaacaccaggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagt |
107 |
Q |
| |
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||||||||||| || ||||||||||||||||| || ||||| |||| |||||||| || ||| | || ||||| |||||||||| ||||||||||||| |
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| T |
49725241 |
agaaaagaaagtatggtatcaatatttggtgcgagaggaacggcaggctatattgcccccgaggtattttctaggaattttggtgcagtgtcacataagt |
49725340 |
T |
|
| Q |
108 |
cagatgtctacagttacggaatgatggttttagagatggttggtcgaagaaagaacattaaggttgaagttgattgttctagcgagttatattttccaca |
207 |
Q |
| |
|
||||||| |||||||| ||||||||||| | || |||||||| | ||||| ||||| || |||||| || | || || || |||||||||| || |
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| T |
49725341 |
cagatgtttacagttatggaatgatggtcatggaaatggttgggaggagaaaaaacatcaacactgaagtggaccgctcgagtgaaatatattttcctca |
49725440 |
T |
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| Q |
208 |
ctggatttacaagagtcttgaattgaatcaggatcttgg |
246 |
Q |
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||||||||||| ||||||| | |||||||||||||| |
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| T |
49725441 |
ttggatttacaaccgtcttgattcaaatcaggatcttgg |
49725479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 49728706 - 49728795
Alignment:
| Q |
51 |
caggatatattgctccagagttgttctctagaaattttggtggggtgtcacataagtcagatgtctacagttacggaatgatggttttag |
140 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||| || || || || || ||||| || ||||| |||||||||||||||| |
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| T |
49728706 |
caggatacattgctccagaagtgttctctagaaattttggtggcgtctctcacaaatctgatgtatatagttatggaatgatggttttag |
49728795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 44035825 - 44035878
Alignment:
| Q |
98 |
tcacataagtcagatgtctacagttacggaatgatggttttagagatggttggt |
151 |
Q |
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||||||||||| |||||||| ||||||||||||||| | |||| ||||||||| |
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| T |
44035825 |
tcacataagtctgatgtctatagttacggaatgatgttgctagaaatggttggt |
44035878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 30955409 - 30955461
Alignment:
| Q |
98 |
tcacataagtcagatgtctacagttacggaatgatggttttagagatggttgg |
150 |
Q |
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||||| ||||| ||||| || ||||| ||||||||| |||||||||||||||| |
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| T |
30955409 |
tcacacaagtctgatgtttatagttatggaatgatgcttttagagatggttgg |
30955461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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