View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_97 (Length: 248)
Name: NF1249_low_97
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_97 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 44142035 - 44141865
Alignment:
| Q |
1 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc----aacaaaacnnnnnnnnca |
96 |
Q |
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| T |
44142035 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcacattttctcaaaaaaaaaaaaaaaaaaaaca |
44141936 |
T |
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| Q |
97 |
ttaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatatt |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44141935 |
ttaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatatt |
44141865 |
T |
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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 50062613 - 50062442
Alignment:
| Q |
1 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc-----aacaaaacnnnnnnnnc |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| | |
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| T |
50062613 |
tcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaaaaaaaaaaaaaaaac |
50062514 |
T |
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| Q |
96 |
attaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatatt |
167 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50062513 |
cttaatggttgtataagatataacctcaggctcctttgatagtggtcctgactcctgaatacaatttatatt |
50062442 |
T |
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