View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250-Insertion-3 (Length: 492)
Name: NF1250-Insertion-3
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 975428 - 975709
Alignment:
| Q |
7 |
agtttaggcaaaatctgatctctaatcatggtagggctaatgatggaaagaagtgctcctctcatgtacttgtgagtggagccatgaacagctgcaatat |
106 |
Q |
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| T |
975428 |
agtttaggcaaaatctgatctctaatcatggtagggctaatgatggaaagaagtgctcctctcatgtacttgtgagtggagccatgaacagctgcaatat |
975527 |
T |
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| Q |
107 |
tacattttcctaagatatctaacatagattgagggtatccaggaacaagaccttttgattcattcaacaatatgtatctattaagctctggatccattga |
206 |
Q |
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| T |
975528 |
tacattttcctaagatatctaacatagattgagggtatccaggaacaagaccttttgattcattcaacaatatgtatctattaagctctggatccattga |
975627 |
T |
|
| Q |
207 |
aacaattgtaggactgccaagtatgtgtgatttgaaaaaacttccaaacctgccatttacaaatttgactaatttaagaaac |
288 |
Q |
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| T |
975628 |
aacaattgtaggactgccaagtatgtgtgatttgaaaaaacttccaaacctgccatttacaaatttgactaatttaagaaac |
975709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 337 - 428
Target Start/End: Original strand, 975812 - 975903
Alignment:
| Q |
337 |
gattttcttgaaactctaaaatataactattataaaattatactgacacaatgactttgtctaattcatcgtaaattcaaacatacattaaa |
428 |
Q |
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| T |
975812 |
gattttcttgaaactctaaaatataactattataaaattatactgacacaatgactttgtctaattcatcgtaaattcaaacatacactaaa |
975903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 336
Target Start/End: Original strand, 975726 - 975754
Alignment:
| Q |
308 |
ggtctaatagtccaatggaatgaaataaa |
336 |
Q |
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| T |
975726 |
ggtctaatagtccaatggaatgaaataaa |
975754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 5590765 - 5591025
Alignment:
| Q |
9 |
tttaggcaaaatctgatctctaatcatggtagggctaatgatggaaagaagtgctcctctcatgtacttgtgagtggagccatgaacagctgcaatatta |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5590765 |
tttaggcaaaatctgatctctaatcatggtagggctaatgatggaaagaagtgctcctctcatgtacttgtgagtggagccatgaactgctgcaatatta |
5590864 |
T |
|
| Q |
109 |
cattttcctaagatatctaacatagattgagggtatccaggaacaagaccttttgattcattcaacaatatgtatctattaagctctggatccattgaaa |
208 |
Q |
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| T |
5590865 |
cattttcctaagatatctaacatagattgagggtatccaggaacaagaccttttgattcattcattaatatgtatctattaagctctggatccattgaaa |
5590964 |
T |
|
| Q |
209 |
caattgtaggactgccaagtatgtgtgatttgaaaaaacttccaaacctgccatttacaaa |
269 |
Q |
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| T |
5590965 |
ctattgtagggcagccaagtatatgtgatttgaaaaaacttccaaacctgccattcacaaa |
5591025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 444
Target Start/End: Original strand, 5591356 - 5591463
Alignment:
| Q |
337 |
gattttcttgaaactctaaaatataactattataaaattatactgacacaatgactttgtctaattcatcgtaaattcaaacatacattaaactttaaaa |
436 |
Q |
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|||||| || |||||| |||||||||| || ||||| ||||| ||| ||||| ||||||||||||||||||||||||||| |||| |||||||| ||| |
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| T |
5591356 |
gattttgttaaaactcgaaaatataacatttccaaaatcatactaacataatgattttgtctaattcatcgtaaattcaaacgtacactaaactttgaaa |
5591455 |
T |
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| Q |
437 |
atccagtc |
444 |
Q |
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| T |
5591456 |
attcagtc |
5591463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 9 - 262
Target Start/End: Original strand, 5066570 - 5066823
Alignment:
| Q |
9 |
tttaggcaaaatctgatctctaatcatggtagggctaatgatggaaagaagtgctcctctcatgtacttgtgagtggagccatgaacagctgcaatatta |
108 |
Q |
| |
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|||||| |||| ||||| ||| || | ||| || |||||||| ||||| | || ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5066570 |
tttaggtaaaagctgatttctgattaaggtgggactaatgattgaaagcaatgtccctctcatgtacttgtgagtggagccatgaacagctgcaatgtta |
5066669 |
T |
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| Q |
109 |
cattttcctaagatatctaacatagattgagggtatccaggaacaagaccttttgattcattcaacaatatgtatctattaagctctggatccattgaaa |
208 |
Q |
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| T |
5066670 |
cattttcctaagatatctaacatggattgagggtatcctggaacaaacccttttgcttcattcatcaatatgtatctatttagttctggatccattgata |
5066769 |
T |
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| Q |
209 |
caattgtaggactgccaagtatgtgtgatttgaaaaaacttccaaacctgccat |
262 |
Q |
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|||||||||||| || | |||||| |||||||||||| | ||| ||||||||| |
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| T |
5066770 |
caattgtaggacatcctaatatgtgagatttgaaaaaattcccatacctgccat |
5066823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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