View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1250-Insertion-5 (Length: 350)
Name: NF1250-Insertion-5
Description: NF1250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1250-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 52472256 - 52472588
Alignment:
| Q |
8 |
ctttccgatggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattat---acaaaggcttcaatgtttacctctacctcaccaaac |
104 |
Q |
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| T |
52472256 |
ctttccgatggtctgcaagcaacccactctaaaaataatgtcaattccacttaagtattattacacaaaggcttcaatgtttacctctacctcaccaaac |
52472355 |
T |
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| Q |
105 |
agaatcaccgtttt--ttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtctagtagtagtagatatatct |
202 |
Q |
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| T |
52472356 |
agaatcaccgttttttttagcgttttccattggttgtgactctatgatcatctccttctttcttctaatagatcaatgtc------tagtagatatatct |
52472449 |
T |
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| Q |
203 |
tcttcatctttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctttgtgttctccacttctccacct |
302 |
Q |
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| T |
52472450 |
tcttcatctttccaactttcccacatatactttccttatattgggcttcctagggcccaaatccaacactttttcctttgtg--------ttctccacct |
52472541 |
T |
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| Q |
303 |
ggcccctattctgaccctccatttctaacattctaatgactgcattg |
349 |
Q |
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| T |
52472542 |
ggcccctattctgaccctccatttctaacattctaatgactacattg |
52472588 |
T |
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