View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_high_12 (Length: 243)
Name: NF12500_high_12
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 10289956 - 10289724
Alignment:
| Q |
1 |
ctgtcagcaagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagca |
100 |
Q |
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| T |
10289956 |
ctgtcagcaagaaacaatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagca |
10289857 |
T |
|
| Q |
101 |
atgataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatt-ttttcaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10289856 |
atgataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatatttttttcaat |
10289757 |
T |
|
| Q |
200 |
gcagtgtgaatattttttcgaactctttctgat |
232 |
Q |
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| T |
10289756 |
gcagtgtgaatattttttcgaactctttctgat |
10289724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 9747568 - 9747748
Alignment:
| Q |
16 |
gatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttt |
115 |
Q |
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| T |
9747568 |
gatactgctgtgccacaa-gttttccgagacatcagctctggtctaaatggtacgatagaattcttaagtttcaagcattgagcaatgataccatagttt |
9747666 |
T |
|
| Q |
116 |
tgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataatattttttcaa |
198 |
Q |
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| T |
9747667 |
tgatttaag-aaaagccggttaatgttgttttattatgttcttacttcatgtgcaattttatcgacaaataatcttttttcaa |
9747748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 10298092 - 10297883
Alignment:
| Q |
2 |
tgtcagcaagaaacgatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaa |
101 |
Q |
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| T |
10298092 |
tgtcatcaagagacgatactgttgtgccacaa-gttttcagagacatcagctctggtttaaatggtacaataaaattcttaagt--------------at |
10298008 |
T |
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| Q |
102 |
tgataccatagttttgattcaagaaaaaggtggttaatgttgttttattatgtttttacttcacacgcaattatatcgaccaataat-attttttcaatg |
200 |
Q |
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| T |
10298007 |
tcataccatagttttgatacaa-aaaaaggcggttaatgttgttttattatgcttttacttcccgtgcaattatattggtgaataatctttttttcaatg |
10297909 |
T |
|
| Q |
201 |
cagtgtgaatattttttcgaactctttctg |
230 |
Q |
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| |||| ||||||||||||||||||| |
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| T |
10297908 |
c----tgaactttttttcgaactctttctg |
10297883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 34694292 - 34694209
Alignment:
| Q |
43 |
agacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttttgattcaagaa |
126 |
Q |
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| T |
34694292 |
agacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactatagttttgattcaagaa |
34694209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 34716704 - 34716621
Alignment:
| Q |
43 |
agacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttttgattcaagaa |
126 |
Q |
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||||||||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34716704 |
agacatcagctctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactatagttttgattcaagaa |
34716621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 37744082 - 37744192
Alignment:
| Q |
16 |
gatactgttgtgccacaaagttttcaaagacatcagatctggtttaaatggtacaataaaattcttaagtttcaagcattgagcaatgataccatagttt |
115 |
Q |
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|||||||||||||||||| |||| ||| |||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||| |
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| T |
37744082 |
gatactgttgtgccacaag--tttccgagaaatcaactctggtttaaatggtaggatagaatttttaagtttcaagcattgagcaatgatactttagttt |
37744179 |
T |
|
| Q |
116 |
tgattcaagaaaa |
128 |
Q |
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||||| ||||||| |
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| T |
37744180 |
tgatttaagaaaa |
37744192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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