View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_high_13 (Length: 229)
Name: NF12500_high_13
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 43850728 - 43850506
Alignment:
| Q |
1 |
cctggctcgggcaaaaagtatcttatcgtatgttgctgtacatgacacgtacatgttttagtttccatagaaagctaaggtaatccaagtatcatcatac |
100 |
Q |
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| T |
43850728 |
cctggctcgggcaaaaagtatcttatcgtatgttgctgtacatgacacgtacatgttttagtttccatagaaagctaaggtaatccaagtatcatcatac |
43850629 |
T |
|
| Q |
101 |
tacatcgcaaacaagtagagaagttctagtatcctgaaaattaccgtgaataccctcaagacaagtactaagcctaagggccaattagtaacttaggatt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43850628 |
tacatcgcaaacaagtagagaagttccagtatcctgaaaattaccgcgaataccctcaagacaagtactaagcctatgggccaattagtaacttaggatt |
43850529 |
T |
|
| Q |
201 |
tcatcatcataataaccattaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
43850528 |
tcatcatcataataaccattaac |
43850506 |
T |
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