View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12500_high_14 (Length: 221)

Name: NF12500_high_14
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12500_high_14
NF12500_high_14
[»] chr5 (7 HSPs)
chr5 (2-115)||(10290210-10290323)
chr5 (122-221)||(10290056-10290155)
chr5 (1-115)||(9747057-9747171)
chr5 (1-56)||(10298669-10298724)
chr5 (57-115)||(10298467-10298525)
chr5 (134-221)||(9747370-9747454)
chr5 (125-221)||(10298177-10298270)
[»] chr8 (1 HSPs)
chr8 (134-221)||(37743885-37743971)
[»] chr2 (2 HSPs)
chr2 (134-221)||(34694433-34694519)
chr2 (134-221)||(34716845-34716931)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 10290323 - 10290210
Alignment:
Q  2 tccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaatt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290323 tccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaatt 10290224  T
Q  102 cgttcatatttatt 115  Q
    ||||||||||||||    
T  10290223 cgttcatatttatt 10290210  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 10290155 - 10290056
Alignment:
Q  122 tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290155 tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 10290056  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9747057 - 9747171
Alignment:
Q  1 gtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaat 100  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||   ||  ||||||| ||||||    
T  9747057 gtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaagaat 9747156  T
Q  101 tcgttcatatttatt 115  Q
    ||||||||| |||||    
T  9747157 tcgttcatacttatt 9747171  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10298724 - 10298669
Alignment:
Q  1 gtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10298724 gtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc 10298669  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
Q  57 ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt 115  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  10298525 ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt 10298467  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 9747370 - 9747454
Alignment:
Q  134 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 221  Q
    |||||| |||||| |||||||||||||||| |||||   |||||||||   |||||||||||||||||| ||||||||||||||||||    
T  9747370 ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaact 9747454  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 10298270 - 10298177
Alignment:
Q  125 tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 221  Q
    ||||||| ||||||||| |||||||||||| ||||||  ||| |   ||||||||||   |||||||||||||||||| ||||||||| ||||||||    
T  10298270 tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaact 10298177  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 37743885 - 37743971
Alignment:
Q  134 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 221  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  ||||||||||||||||||    
T  37743885 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact 37743971  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 34694519 - 34694433
Alignment:
Q  134 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 221  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  ||||||||||||||||||    
T  34694519 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact 34694433  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 34716931 - 34716845
Alignment:
Q  134 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 221  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  ||||||||||||||||||    
T  34716931 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact 34716845  T

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