View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_high_3 (Length: 438)
Name: NF12500_high_3
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 16791686 - 16791264
Alignment:
| Q |
1 |
ataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactgcattgt |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
16791686 |
ataatcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgcattgt |
16791587 |
T |
|
| Q |
101 |
acatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctca-----gagaat |
195 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16791586 |
acatgattttaatacgtgacccttcactttgttcgatggctactcctaatgcactttcaatattttccttttcagcgataaccatctcatagtcgagaat |
16791487 |
T |
|
| Q |
196 |
cgattgtttatgttttttatttccactaaaagattcttgcaagaagtgagagaaaataatgacatactcatagatttcaatggtagaagnnnnnnnnncc |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
16791486 |
cgattgtttatgttttttatttccactaaaagattcttgcaagaagtgagagaaaataatgacatactcatagatttcaatggtggaa-aaaaaaaaacc |
16791388 |
T |
|
| Q |
296 |
aaagattaccacaacttgagggcattttcctatcataatgaatgagttcaaatgattctgtagcgtcaatgaacttatttagaaaccttcacatcttctc |
395 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16791387 |
aaagattaccacaacttgagggcattttcctatcataatgaatgtgttcaagtgattctgtagcgtcaatgaacttatttagaaaccttcacatcttctc |
16791288 |
T |
|
| Q |
396 |
gcacaagatgacatgttgattgatc |
420 |
Q |
| |
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|||||| |||||||| ||||||||| |
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| T |
16791287 |
gcacaaaatgacatg-tgattgatc |
16791264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 16790276 - 16790002
Alignment:
| Q |
5 |
tcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactgcattgtacat |
104 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
16790276 |
tcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgcattgtacat |
16790177 |
T |
|
| Q |
105 |
gattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctcagag------aatcga |
198 |
Q |
| |
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|||||||| || |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||| || |||||| |
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| T |
16790176 |
gattttaacaattgatccttcactatgttcggtcgctactcctagcgcactttcaacattttccttttcagcaataaccatctcatagtcaaacaatcga |
16790077 |
T |
|
| Q |
199 |
ttgtttatg-ttttttatttccactaaaagattcttgcaagaagtgagagaaaataatgacatactcatagatttca |
274 |
Q |
| |
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| ||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
16790076 |
tcgtttatgtttttttatttccactatatgattcttgcaagaagt--gagaaaataatgacatactcgtagatttca |
16790002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 16616799 - 16616983
Alignment:
| Q |
5 |
tcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactgcattgtacat |
104 |
Q |
| |
|
|||||||||||| || |||| || ||||||||||| |||||||||||||| |||| ||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
16616799 |
tcaatgcaaataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacat |
16616898 |
T |
|
| Q |
105 |
gattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctca |
189 |
Q |
| |
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||||| | |||| |||||||||||||||||| |||||||| | | ||||||||| | ||||||||| ||||||||||| |||| |
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| T |
16616899 |
aattttcacaagtaatccttcactttgttcggcagctactccaactacactttcaacaatttcctttttagcgataaccacctca |
16616983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 16792434 - 16792621
Alignment:
| Q |
1 |
ataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactgcattgt |
100 |
Q |
| |
|
|||||||||| |||| ||||||| | ||||||||||| |||| ||||||||| || ||||||||||||| ||| | |||||||||||| |||| ||| |
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|
| T |
16792434 |
ataatcaatgtgaataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgattgatagtcattgcaatgt |
16792533 |
T |
|
| Q |
101 |
acatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctca |
189 |
Q |
| |
|
|||||||||||| |||| ||| |||| |||||||| |||||||||| |||||||| ||||||||||||||| ||||||||| |||| |
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|
| T |
16792534 |
acatgattttaacaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccttttcaacgataaccacctca |
16792621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 16628498 - 16628732
Alignment:
| Q |
4 |
atcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactgcattgtaca |
103 |
Q |
| |
|
||||| ||||||| || ||| || |||||||| || ||||||||||||| |||||||||||||||| |||| ||||||| |||||||||||||||| |
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|
| T |
16628498 |
atcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtaca |
16628597 |
T |
|
| Q |
104 |
tgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctcagag------aatcg |
197 |
Q |
| |
|
||||||||| |||| ||||| || |||||||| |||| ||||| | ||||||| ||||||||||||| ||||||||| |||| || ||||| |
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|
| T |
16628598 |
tgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcg |
16628697 |
T |
|
| Q |
198 |
attgtttatgttttttatttccactaaaagattct |
232 |
Q |
| |
|
||| ||||||| ||||||||| |||||| ||||| |
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|
| T |
16628698 |
attatttatgtcttttatttctgctaaaacattct |
16628732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 16637379 - 16637613
Alignment:
| Q |
4 |
atcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactgcattgtaca |
103 |
Q |
| |
|
||||| ||||||| || ||| || |||||||| || ||||||||||||| |||||||||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
16637379 |
atcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtaca |
16637478 |
T |
|
| Q |
104 |
tgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctcagag------aatcg |
197 |
Q |
| |
|
||||||||| |||| ||||| || |||||||| |||| ||||| | ||||||| ||||||||||||| ||||||||| |||| || ||||| |
|
|
| T |
16637479 |
tgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgataaccacctcacagtcaaacaatcg |
16637578 |
T |
|
| Q |
198 |
attgtttatgttttttatttccactaaaagattct |
232 |
Q |
| |
|
||| ||||||| ||||||||| |||||| ||||| |
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|
| T |
16637579 |
attatttatgtcttttatttctgctaaaacattct |
16637613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 16790521 - 16790709
Alignment:
| Q |
1 |
ataatcaatgcaaatagttgaaaatagtatataaaatcacttaccttttt-atcataagtgaagtgagatacgtggttccgattgatagtcactgcattg |
99 |
Q |
| |
|
|||||||||| ||||||| |||| | ||||||||||| |||| ||||| |||| ||||||| |||||||| ||| | |||||||||||| ||||||| |
|
|
| T |
16790521 |
ataatcaatgtgaatagttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcattgcattg |
16790620 |
T |
|
| Q |
100 |
tacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgataaccatctca |
189 |
Q |
| |
|
||||||||||||| |||| ||| |||| |||||||| |||||||||| |||||||| ||||||||| ||||| ||||||||| |||| |
|
|
| T |
16790621 |
tacatgattttaacaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccctttcaacgataaccacctca |
16790709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 38877337 - 38877446
Alignment:
| Q |
13 |
aatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggttccgattgatagtcactgcattgtacatgattttaa |
112 |
Q |
| |
|
||||||| |||| || |||||||| || | |||||||||||||| || ||||||||||| ||| | |||| |||||||||||||||||||||||||||| |
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|
| T |
38877337 |
aatagttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcattgtacatgattttaa |
38877436 |
T |
|
| Q |
113 |
taagtgatcc |
122 |
Q |
| |
|
|||| |||| |
|
|
| T |
38877437 |
gaagtaatcc |
38877446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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