View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12500_high_5 (Length: 382)

Name: NF12500_high_5
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12500_high_5
NF12500_high_5
[»] chr8 (30 HSPs)
chr8 (14-367)||(29262869-29263223)
chr8 (245-307)||(1470911-1470973)
chr8 (245-334)||(4558751-4558840)
chr8 (176-299)||(7026612-7026738)
chr8 (257-366)||(12361157-12361266)
chr8 (257-325)||(34770857-34770925)
chr8 (264-366)||(11415126-11415228)
chr8 (182-286)||(34563137-34563244)
chr8 (257-307)||(35374428-35374478)
chr8 (257-366)||(6509299-6509408)
chr8 (245-294)||(25867039-25867088)
chr8 (261-334)||(29973050-29973123)
chr8 (261-301)||(7878547-7878587)
chr8 (245-289)||(27728094-27728138)
chr8 (245-365)||(28784793-28784912)
chr8 (175-297)||(42508628-42508753)
chr8 (243-290)||(2100756-2100803)
chr8 (220-288)||(41620365-41620434)
chr8 (257-307)||(787161-787211)
chr8 (257-358)||(31705049-31705151)
chr8 (257-307)||(38874611-38874661)
chr8 (262-355)||(8062494-8062587)
chr8 (245-294)||(44348440-44348489)
chr8 (245-317)||(2093232-2093304)
chr8 (220-289)||(11494080-11494150)
chr8 (245-289)||(13561385-13561429)
chr8 (251-366)||(26473748-26473864)
chr8 (242-282)||(33714315-33714355)
chr8 (258-366)||(42215302-42215410)
chr8 (244-292)||(42237492-42237540)
[»] chr6 (38 HSPs)
chr6 (14-367)||(27693434-27693788)
chr6 (14-367)||(27595562-27595920)
chr6 (14-367)||(27615268-27615617)
chr6 (14-270)||(27727165-27727428)
chr6 (248-367)||(281843-281962)
chr6 (220-290)||(3217262-3217333)
chr6 (245-290)||(10749300-10749345)
chr6 (175-237)||(14340929-14340993)
chr6 (220-307)||(5550059-5550147)
chr6 (257-307)||(24838798-24838848)
chr6 (257-307)||(29274284-29274334)
chr6 (176-279)||(2785750-2785857)
chr6 (260-292)||(2732309-2732341)
chr6 (259-299)||(22742333-22742373)
chr6 (244-296)||(29940748-29940800)
chr6 (259-367)||(30523627-30523734)
chr6 (245-292)||(1402949-1402996)
chr6 (257-300)||(2027468-2027511)
chr6 (257-292)||(7713990-7714025)
chr6 (221-307)||(11340680-11340767)
chr6 (14-61)||(27707555-27707602)
chr6 (257-292)||(27713472-27713507)
chr6 (246-292)||(3204612-3204658)
chr6 (245-307)||(4006667-4006729)
chr6 (264-366)||(6647359-6647461)
chr6 (257-307)||(9093611-9093661)
chr6 (261-327)||(30522475-30522541)
chr6 (245-290)||(9027530-9027575)
chr6 (257-326)||(14492267-14492336)
chr6 (245-282)||(29269849-29269886)
chr6 (260-292)||(1904783-1904815)
chr6 (260-292)||(1909016-1909048)
chr6 (245-297)||(2514655-2514707)
chr6 (247-307)||(2735024-2735084)
chr6 (245-297)||(10452425-10452477)
chr6 (245-289)||(24836272-24836316)
chr6 (263-367)||(25100014-25100118)
chr6 (257-305)||(31671131-31671179)
[»] scaffold0349 (2 HSPs)
scaffold0349 (14-270)||(5744-6007)
scaffold0349 (257-292)||(18437-18472)
[»] scaffold0024 (1 HSPs)
scaffold0024 (176-307)||(27457-27591)
[»] chr3 (29 HSPs)
chr3 (245-367)||(10357386-10357508)
chr3 (245-292)||(1395624-1395671)
chr3 (257-367)||(2201093-2201203)
chr3 (243-287)||(25195375-25195419)
chr3 (257-368)||(36646376-36646487)
chr3 (245-359)||(237350-237464)
chr3 (245-307)||(23952161-23952223)
chr3 (257-307)||(32555036-32555086)
chr3 (235-308)||(48397590-48397662)
chr3 (319-363)||(29427644-29427688)
chr3 (221-292)||(49586986-49587057)
chr3 (245-288)||(26990687-26990730)
chr3 (245-292)||(32703091-32703138)
chr3 (249-307)||(21872326-21872384)
chr3 (257-307)||(27792837-27792887)
chr3 (175-307)||(38462161-38462296)
chr3 (245-290)||(10101548-10101593)
chr3 (245-290)||(10212473-10212518)
chr3 (232-289)||(20143866-20143921)
chr3 (262-307)||(21367824-21367869)
chr3 (232-289)||(23269268-23269323)
chr3 (245-294)||(42808932-42808981)
chr3 (245-294)||(42809254-42809303)
chr3 (245-290)||(53736185-53736230)
chr3 (279-367)||(3044254-3044342)
chr3 (245-289)||(15304420-15304464)
chr3 (257-297)||(23315591-23315631)
chr3 (176-282)||(39971200-39971309)
chr3 (245-289)||(54965459-54965503)
[»] chr2 (30 HSPs)
chr2 (257-367)||(33942115-33942225)
chr2 (223-367)||(1939327-1939470)
chr2 (214-292)||(17952771-17952850)
chr2 (257-360)||(22681187-22681290)
chr2 (245-307)||(656832-656894)
chr2 (257-307)||(11513863-11513913)
chr2 (257-367)||(43141836-43141946)
chr2 (260-309)||(1160798-1160846)
chr2 (259-292)||(43173189-43173222)
chr2 (257-289)||(3423841-3423873)
chr2 (259-307)||(8017401-8017449)
chr2 (245-297)||(25609749-25609801)
chr2 (257-297)||(31740024-31740064)
chr2 (244-283)||(6988067-6988106)
chr2 (245-292)||(9478252-9478299)
chr2 (249-292)||(20059099-20059142)
chr2 (220-292)||(28803576-28803649)
chr2 (255-366)||(29316771-29316882)
chr2 (240-294)||(3458606-3458659)
chr2 (257-366)||(18179236-18179346)
chr2 (245-366)||(37053547-37053669)
chr2 (220-290)||(3673734-3673805)
chr2 (245-290)||(33192146-33192191)
chr2 (260-309)||(33944573-33944622)
chr2 (257-290)||(34339871-34339904)
chr2 (244-308)||(9395082-9395146)
chr2 (257-289)||(10646362-10646394)
chr2 (263-307)||(18066099-18066143)
chr2 (267-307)||(29643471-29643511)
chr2 (176-274)||(33197327-33197428)
[»] chr7 (32 HSPs)
chr7 (222-323)||(28340883-28340985)
chr7 (176-303)||(12834996-12835126)
chr7 (245-294)||(27121654-27121703)
chr7 (257-300)||(31002726-31002769)
chr7 (257-360)||(38010679-38010782)
chr7 (257-300)||(40689048-40689091)
chr7 (177-284)||(22387979-22388092)
chr7 (245-299)||(35536060-35536114)
chr7 (257-306)||(30134014-30134063)
chr7 (245-290)||(39591539-39591584)
chr7 (246-291)||(46825052-46825097)
chr7 (249-289)||(3501039-3501079)
chr7 (245-357)||(28165044-28165156)
chr7 (245-297)||(49060493-49060545)
chr7 (222-289)||(3802212-3802278)
chr7 (257-292)||(23918922-23918957)
chr7 (257-300)||(39908056-39908099)
chr7 (245-292)||(48157190-48157237)
chr7 (257-291)||(1417229-1417263)
chr7 (257-307)||(12110325-12110375)
chr7 (257-307)||(22759151-22759201)
chr7 (257-307)||(27548228-27548278)
chr7 (245-294)||(18749878-18749927)
chr7 (178-239)||(22388547-22388611)
chr7 (266-307)||(24909638-24909679)
chr7 (257-290)||(30456522-30456555)
chr7 (260-301)||(40428523-40428564)
chr7 (259-292)||(47046178-47046211)
chr7 (245-281)||(5269483-5269519)
chr7 (266-306)||(24895330-24895370)
chr7 (260-288)||(30751485-30751513)
chr7 (245-293)||(43318597-43318645)
[»] chr4 (33 HSPs)
chr4 (245-297)||(4071835-4071887)
chr4 (245-307)||(8130127-8130189)
chr4 (245-307)||(49219092-49219154)
chr4 (251-367)||(11264260-11264376)
chr4 (186-289)||(36734784-36734890)
chr4 (244-307)||(53626728-53626791)
chr4 (257-367)||(6466041-6466151)
chr4 (245-366)||(1137665-1137786)
chr4 (217-286)||(7022592-7022662)
chr4 (257-289)||(11917524-11917556)
chr4 (257-297)||(13949909-13949949)
chr4 (263-307)||(24091434-24091478)
chr4 (257-365)||(54325034-54325142)
chr4 (260-292)||(55437356-55437388)
chr4 (256-363)||(7694009-7694116)
chr4 (245-292)||(20936072-20936119)
chr4 (245-292)||(30024653-30024700)
chr4 (257-296)||(32724084-32724123)
chr4 (257-367)||(2996538-2996648)
chr4 (247-289)||(5219573-5219615)
chr4 (261-367)||(20936224-20936330)
chr4 (261-299)||(21952930-21952968)
chr4 (245-327)||(35958608-35958690)
chr4 (261-294)||(22684584-22684617)
chr4 (313-366)||(29467620-29467673)
chr4 (214-364)||(30207569-30207719)
chr4 (245-290)||(31038939-31038984)
chr4 (257-294)||(41701509-41701546)
chr4 (224-286)||(52294042-52294106)
chr4 (257-290)||(52735087-52735120)
chr4 (263-360)||(53315297-53315394)
chr4 (257-297)||(27623600-27623640)
chr4 (257-349)||(44319914-44320006)
[»] chr1 (40 HSPs)
chr1 (255-307)||(15361676-15361728)
chr1 (245-367)||(7218069-7218191)
chr1 (245-307)||(49517023-49517085)
chr1 (245-294)||(1879095-1879144)
chr1 (220-366)||(17269177-17269324)
chr1 (245-286)||(45234150-45234191)
chr1 (244-307)||(25006089-25006152)
chr1 (257-292)||(28467377-28467412)
chr1 (245-367)||(15437916-15438038)
chr1 (242-292)||(27738250-27738300)
chr1 (257-307)||(33204443-33204493)
chr1 (245-363)||(44031998-44032116)
chr1 (257-307)||(48830131-48830181)
chr1 (214-292)||(4200150-4200229)
chr1 (260-300)||(9656618-9656658)
chr1 (245-297)||(15360847-15360899)
chr1 (257-365)||(25479546-25479654)
chr1 (220-300)||(7274001-7274082)
chr1 (257-292)||(10439651-10439686)
chr1 (249-365)||(35017531-35017649)
chr1 (319-366)||(35925717-35925764)
chr1 (245-292)||(44936660-44936707)
chr1 (329-367)||(6262057-6262095)
chr1 (245-307)||(29007771-29007833)
chr1 (257-307)||(30371113-30371163)
chr1 (244-290)||(30815707-30815753)
chr1 (219-292)||(45204994-45205068)
chr1 (175-307)||(49557021-49557156)
chr1 (180-292)||(4363702-4363815)
chr1 (257-366)||(10199404-10199513)
chr1 (245-286)||(14737781-14737822)
chr1 (338-367)||(23445380-23445409)
chr1 (245-286)||(26184704-26184745)
chr1 (245-289)||(17628552-17628596)
chr1 (247-307)||(34179927-34179987)
chr1 (176-204)||(37591315-37591343)
chr1 (258-290)||(43371957-43371989)
chr1 (245-289)||(45804230-45804274)
chr1 (257-297)||(45990123-45990163)
chr1 (257-293)||(47498905-47498941)
[»] chr5 (22 HSPs)
chr5 (245-305)||(14295459-14295519)
chr5 (245-297)||(35135727-35135779)
chr5 (245-292)||(32969187-32969234)
chr5 (257-307)||(32059644-32059694)
chr5 (245-307)||(35960367-35960428)
chr5 (245-307)||(37063129-37063191)
chr5 (249-297)||(583838-583886)
chr5 (257-292)||(8158371-8158406)
chr5 (260-311)||(36796757-36796808)
chr5 (257-288)||(38047929-38047960)
chr5 (257-307)||(9202803-9202853)
chr5 (245-307)||(12595795-12595857)
chr5 (257-306)||(12425536-12425585)
chr5 (245-366)||(28586762-28586883)
chr5 (235-292)||(29117000-29117056)
chr5 (279-364)||(36638734-36638819)
chr5 (257-290)||(39750108-39750141)
chr5 (245-285)||(10303754-10303794)
chr5 (260-300)||(12975315-12975355)
chr5 (220-283)||(17756808-17756872)
chr5 (259-307)||(34205206-34205254)
chr5 (282-366)||(36542278-36542362)
[»] scaffold0085 (1 HSPs)
scaffold0085 (249-287)||(34072-34110)
[»] scaffold0590 (1 HSPs)
scaffold0590 (180-291)||(1145-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (180-291)||(2716-2830)
[»] scaffold0153 (2 HSPs)
scaffold0153 (260-309)||(6552-6600)
scaffold0153 (260-309)||(13572-13620)
[»] scaffold0015 (1 HSPs)
scaffold0015 (260-300)||(69005-69045)
[»] scaffold0549 (2 HSPs)
scaffold0549 (221-307)||(1779-1866)
scaffold0549 (221-307)||(3869-3956)


Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 29263223 - 29262869
Alignment:
Q  14 atcaggtaagaaattcatttctaaagtgtctttgcatataaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 113  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29263223 atcaggtaagaaattcatttctaatgtgtctttgcatatgaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 29263124  T
Q  114 aagcaaaacaagagatagctcc-taaaatttctaaaattgattattttcattcgcttgtattatgtttggataaacaacttaattaagcttacaacatag 212  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29263123 aagcaaatcaagagatagctccctaaaatttctaaaattgattattttcattcgcttgtattatgtttggataaacaacttaattaagcttacaacatag 29263024  T
Q  213 acacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgca 312  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29263023 acacttctcatataagtgtttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgca 29262924  T
Q  313 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29262923 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 29262869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 1470973 - 1470911
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  1470973 tttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcat 1470911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 4558751 - 4558840
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaat 334  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||| || |||  || ||||||||||| ||| ||||||    
T  4558751 tttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaat 4558840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 176 - 299
Target Start/End: Original strand, 7026612 - 7026738
Alignment:
Q  176 tgtttggataaacaacttaattaagc--ttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagt 271  Q
    ||||||||||||||||||||||||||  ||||| |||| ||| || ||||||||||||||||  ||| | || | | ||||| | |||||||||||||||    
T  7026612 tgtttggataaacaacttaattaagcatttacagcataaacatttatcatataagtgcttatgcataagctactgt-tataacaaaagataaaataaagt 7026710  T
Q  272 caaattattttcatataagctgtaagct 299  Q
     ||||| |||||||||||| | ||||||    
T  7026711 aaaattgttttcatataaggtataagct 7026738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 366
Target Start/End: Original strand, 12361157 - 12361266
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    |||||||||| |||||||||| |||||||||||||| ||||||| ||||||  |  || |  ||||| | | |||||| | ||||||| |||||||| ||    
T  12361157 aagataaaatgaagtcaaattgttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggac 12361256  T
Q  357 atgtcataag 366  Q
    ||||||||||    
T  12361257 atgtcataag 12361266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 34770857 - 34770925
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtt 325  Q
    ||||||||||||||||||||| ||||||| |||||| |||| || ||||||  || |||||||||||||    
T  34770857 aagataaaataaagtcaaattgttttcatttaagctataagttgttttcataagctatcctagagagtt 34770925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 11415126 - 11415228
Alignment:
Q  264 aataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcat 363  Q
    ||||||||||||||||||| ||||||| | || |||| ||||||  || ||||||||||||||  | |||| |  ||| ||||||||||| |||||| ||    
T  11415126 aataaagtcaaattatttttatataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttat 11415225  T
Q  364 aag 366  Q
    |||    
T  11415226 aag 11415228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 34563137 - 34563244
Alignment:
Q  182 gataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaatt 277  Q
    ||||||||||||||||||  ||||| | |||| ||| || ||||||||||||||||||||  |||| ||||||| | | | |||||||||||||||||      
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagtta-tttctatgacaaaggataaaataaagtcaaaca 34563235  T
Q  278 attttcata 286  Q
    |||||||||    
T  34563236 attttcata 34563244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 35374478 - 35374428
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  35374478 aagataaaataaagttaaattgttttcatataagctataatctgatttcat 35374428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 366
Target Start/End: Complemental strand, 6509408 - 6509299
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||||||||||||||| | || ||||||||| ||||||| ||||||  || ||||| ||||| |||  ||||| |  ||||||||| ||||   |    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttattgaaataaggtgaaaatagtttataggc 6509309  T
Q  357 atgtcataag 366  Q
    ||||||||||    
T  6509308 atgtcataag 6509299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 25867039 - 25867088
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||| | ||||| ||||||||||||| ||||||||||||||||||    
T  25867039 tttctataacaaaagatgaaataaagtcaaaatattttcatataagctgt 25867088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 29973050 - 29973123
Alignment:
Q  261 taaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaat 334  Q
    ||||||||||||||| |||||||| ||||||| |||| || ||||||  || ||||| ||||||||| ||||||    
T  29973050 taaaataaagtcaaactattttcacataagctataagttgttttcataagctatccttgagagtttatggaaat 29973123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 7878587 - 7878547
Alignment:
Q  261 taaaataaagtcaaattattttcatataagctgtaagctga 301  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  7878587 taaaataaagtcaaattgttttcatataagctataagctga 7878547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 27728138 - 27728094
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||    
T  27728138 tttctataaaaaaagataaaataaagtcaaactattttcatataa 27728094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 28784912 - 28784793
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    |||||| |||| ||||||||||||||||||||| |||| |||| || ||||||||  ||||||  || ||| ||||||| ||    |||| |  ||||||    
T  28784912 tttctaaaataaaagataaaataaagtcaaattgttttgatatcagttgtaagctattttcataagctatcttagagagcttgtaaaaataagctgaaaa 28784813  T
Q  345 tagcttatgaacatgtcataa 365  Q
     ||||||||||||||||||||    
T  28784812 -agcttatgaacatgtcataa 28784793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 297
Target Start/End: Complemental strand, 42508753 - 42508628
Alignment:
Q  175 atgtttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaag 270  Q
    |||||||| ||||||||||||||||  ||||  |||||| ||| || ||||||||| | |||| |||  | || ||||||||||| || |||||||||||    
T  42508753 atgtttgggtaaacaacttaattaagtgcttctaacataaacatttatcatataagggtttatgtattggcta-tttctataataaaatataaaataaag 42508655  T
Q  271 tcaaattattttcatataagctgtaag 297  Q
    || | | ||||||||||||||| ||||    
T  42508654 tcgattgattttcatataagctataag 42508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 2100756 - 2100803
Alignment:
Q  243 attttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||||  | ||||||||||||||||||| ||||||||||||||    
T  2100756 attttctatagcaaaagataaaataaagtcaaaatattttcatataag 2100803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 41620434 - 41620365
Alignment:
Q  220 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatata 288  Q
    ||||| ||||||||||||||  |||||||| | ||| | ||||||||||||||||||||||| ||||||||    
T  41620434 tcatacaagtgcttatatataagttatttt-tgtaacaaaagataaaataaagtcaaattatgttcatata 41620365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 787211 - 787161
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||||| || ||||||||||| ||| ||| ||||||    
T  787211 aagataaaataaagtcaaattgttatcatataagctataaactgttttcat 787161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 358
Target Start/End: Original strand, 31705049 - 31705151
Alignment:
Q  257 aagataaaataaagtcaaattat-tttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 355  Q
    |||||||||| | |||||||||  ||||||||||||| ||||||| ||||||  ||  |||| ||||||||| |||||| |  |||||| |||||||| |    
T  31705049 aagataaaatcatgtcaaattacgtttcatataagctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagcttatgca 31705148  T
Q  356 cat 358  Q
    |||    
T  31705149 cat 31705151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 38874611 - 38874661
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||  ||||||||| |||||||||||||| ||||||| ||||||    
T  38874611 aagataaaatcgagtcaaattcttttcatataagctctaagctgttttcat 38874661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 8062494 - 8062587
Alignment:
Q  262 aaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 355  Q
    |||| ||||||||||| |||||||||||||| |||| || | ||||  || ||| ||||||||||| | |||| |  || ||||||||||||||    
T  8062494 aaaaaaaagtcaaattgttttcatataagctataagatgttctcataagctatcttagagagtttatgaaaataagctggaaatagcttatgaa 8062587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 44348440 - 44348489
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||| | |||||  |||||||||||| ||||||||||||||||||    
T  44348440 tttctataacaaaagatgtaataaagtcaaaatattttcatataagctgt 44348489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 2093232 - 2093304
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcct 317  Q
    |||| |||||| ||||||||||||||||||||  ||||| | |||||| |||| || ||||||| || |||||    
T  2093232 tttcaataataaaagataaaataaagtcaaatggttttcttttaagctataagttgttttcattagctatcct 2093304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 11494080 - 11494150
Alignment:
Q  220 tcatataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    |||||||||||||| |  ||||||||||||| |||| | ||||||| ||||||||||| | |||||||||||    
T  11494080 tcatataagtgcttttgtatatgttattttc-ataacaaaagataacataaagtcaaacttttttcatataa 11494150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 13561429 - 13561385
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||||| |||| || ||||||||||||||| |||||||||||    
T  13561429 tttctataacagaaaattaaataaagtcaaattgttttcatataa 13561385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 366
Target Start/End: Complemental strand, 26473864 - 26473748
Alignment:
Q  251 taatagaagataaaataaagtcaaattatttt-catataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagct 349  Q
    ||||| ||||||||||||| |||| || |||| ||||| || |||||| || ||||||  || ||||||||||| ||| | |||| | || ||| |||||    
T  26473864 taataaaagataaaataaattcaagttgtttttcatatgagttgtaagttgttttcataagctatcctagagagcttatgaaaataagttaaaactagct 26473765  T
Q  350 tatgaacatgtcataag 366  Q
    |||  ||||||||||||    
T  26473764 tatagacatgtcataag 26473748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 33714355 - 33714315
Alignment:
Q  242 tattttctataatagaagataaaataaagtcaaattatttt 282  Q
    |||||||||||| | ||||||||||||||||||| ||||||    
T  33714355 tattttctataacacaagataaaataaagtcaaactatttt 33714315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 42215410 - 42215302
Alignment:
Q  258 agataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaaca 357  Q
    |||||||||||||||||| | ||||  ||||| || ||| ||  |||||| ||| ||||| ||||| ||| | |||| |  |||||| ||||||||||||    
T  42215410 agataaaataaagtcaaactgtttttgtataatctataacctattttcatatgctatcctggagagcttatgtaaataagctgaaaacagcttatgaaca 42215311  T
Q  358 tgtcataag 366  Q
     ||||||||    
T  42215310 agtcataag 42215302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 42237540 - 42237492
Alignment:
Q  244 ttttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    |||| ||||| | ||||||||||||||| ||||| ||||||||||||||    
T  42237540 ttttttataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 27693788 - 27693434
Alignment:
Q  14 atcaggtaagaaattcatttctaaagtgtctttgcatataaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 113  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27693788 atcaggtaagaaattcatttctaaaatgtatttgcatatgaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 27693689  T
Q  114 aagcaaaacaagagatagctcc-taaaatttctaaaattgattattttcattcgcttgtattatgtttggataaacaacttaattaagcttacaacatag 212  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27693688 aagcaaatcaagagatagctccctaaaatttctaaaattgattattttcattcgcttgtatcatgtttggataaacaacttaattaagcttacaacatag 27693589  T
Q  213 acacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgca 312  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27693588 acacttctcatataagtgtttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgca 27693489  T
Q  313 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27693488 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 27693434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 27595920 - 27595562
Alignment:
Q  14 atcaggtaagaaattcatttctaaagtgtctttgcatataaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 113  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| ||||| ||| ||||||||||||||||||| || |||||||    
T  27595920 atcaggtaagaaattcatttctaaaatgtctttgcatatgaaatgcatcagcgaacaatcttaaagtttgcgatatcttttcatttgcaccgtcttcaaa 27595821  T
Q  114 aagcaaaacaagagatagctcc-taaaatttctaaaattgattattttcattcgcttgtatt----atgtttggataaacaacttaattaagcttacaac 208  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| |    ||||||||||||||||||||||||||||| ||      
T  27595820 aagcaaaacaagagatagctccctaaaatttctaaaattgactattttcgttcgcttgtaattgccatgtttggataaacaacttaattaagcttgcagt 27595721  T
Q  209 atagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatt 308  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  27595720 atagacacttcccatgtaagtgcttatatatgttattttctataataaaagataaaataaagtcaaattattttcatataagctgtaagttaatttcatt 27595621  T
Q  309 tgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27595620 tgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 27595562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 27615617 - 27615268
Alignment:
Q  14 atcaggtaagaaattcatttctaaagtgtctttgcatataaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||| |||    
T  27615617 atcaggtaagaaattcatttctaaagtgtctttgcatatgaaatgcatcagcgaacaatcttaaaattttcaatatcttttcatttgcatcgtctttaaa 27615518  T
Q  114 aagcaaaacaagagatagctcctaaaatttctaaaattgattattttcattcgcttgtatt----atgtttggataaacaacttaattaagcttacaaca 209  Q
    ||  |||||| |||||||||        |||||||||||| ||||||| ||||||||||||    |||||||||||||||| ||||||||||||| | ||    
T  27615517 aattaaaacatgagatagct--------ttctaaaattgactattttcgttcgcttgtattttccatgtttggataaacaaattaattaagcttatatca 27615426  T
Q  210 tagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcattt 309  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  27615425 tagacacttatcatgtaagtgcttttatatgttattttctataataatagataaaataaagtcaaattcttttcatataagctgtaagctgatatcattt 27615326  T
Q  310 gcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 367  Q
    ||||  ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  27615325 gcaaatctagagaatttatggaaattacttgaaaatagcttatgaacatgtcataagt 27615268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 27727428 - 27727165
Alignment:
Q  14 atcaggtaagaaattcatttctaaagtgtctttgcatataaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 113  Q
    ||||||||||||||| |||| |||||| ||||||||||| |||||||| |  ||| ||| ||||||  |||||||||||||||||||||| | |||||||    
T  27727428 atcaggtaagaaattaatttttaaagtttctttgcatatgaaatgcattagtgaaaaatcttaaaaacttcgatatcttttcatttgcattgtcttcaaa 27727329  T
Q  114 aagcaaaacaagagatagct-cctaaaatttctaaaattgattattttcattcgcttgtatt----atgtttggataaacaacttaattaagcttacaac 208  Q
    ||||||||   ||||||||| |||||||||||| ||||||| ||||||| ||||  | ||||    |||||| ||| || | |||||||||||||| |      
T  27727328 aagcaaaatgggagatagctccctaaaatttctgaaattgactattttcgttcgtgtatattgcccatgtttagattaatagcttaattaagcttatagt 27727229  T
Q  209 atagacacttctcatataagtgcttatat--atgttattttctataatagaagataaaataaag 270  Q
    ||| |||||| ||||||||||||||||||  | |||||||||||||||  ||||||||||||||    
T  27727228 ataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 27727165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 281962 - 281843
Alignment:
Q  248 ctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatag 347  Q
    |||||| | |||||||||||||||||| || |||||||||||||| |||||||  |||||  || ||||||||||| | | |||||| |  |||||| |     
T  281962 ctataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaa 281863  T
Q  348 cttatgaacatgtcataagt 367  Q
    |||||  |||||||||||||    
T  281862 cttatagacatgtcataagt 281843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 3217333 - 3217262
Alignment:
Q  220 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    |||||||||||||||| |||  | |||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  3217333 tcatataagtgcttatgtataagctatttt-tgtaagagaagataaaataaagtcaaattattttcatataag 3217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 10749345 - 10749300
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  10749345 tttctataataaaagataaaataaagttaaattattttcatataag 10749300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 14340993 - 14340929
Alignment:
Q  175 atgtttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatat 237  Q
    |||||||||||||||||||||||||  ||||| |||||| |||||| ||||||||||| ||||||    
T  14340993 atgtttggataaacaacttaattaagtgcttataacataaacacttatcatataagtgtttatat 14340929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 5550059 - 5550147
Alignment:
Q  220 tcatataagtgcttatatatgttat-tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||||||| ||| |  | |||| ||||||  |||||| ||||||||||||| |||||||||||||| ||||||| ||||||    
T  5550059 tcatataagtgcttatgtatatagtatttcgataataagagataacataaagtcaaattgttttcatataagctataagctgttttcat 5550147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 24838848 - 24838798
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| |||| | ||||||||||||||||||| ||||||||||||||    
T  24838848 aagataaaacaaagactaattattttcatataagctataagctgatttcat 24838798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 29274334 - 29274284
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||| ||||||    
T  29274334 aagataaaataaagtcaaattgttttcatataagctataaactgttttcat 29274284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 2785857 - 2785750
Alignment:
Q  176 tgtttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagt 271  Q
    ||||||||||||||||||||||||  ||||| | |||| || ||| ||||||| ||||||||  || || |||||| ||||| | | ||||||| |||||    
T  2785857 tgtttggataaacaacttaattaatcgcttatagcataaacgcttgtcatatatgtgcttatgcatgtgatattttgtataacaaatgataaaacaaagt 2785758  T
Q  272 caaattat 279  Q
    ||||||||    
T  2785757 caaattat 2785750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 2732341 - 2732309
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagct 292  Q
    |||||||||||||||||||||||||||||||||    
T  2732341 ataaaataaagtcaaattattttcatataagct 2732309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 22742333 - 22742373
Alignment:
Q  259 gataaaataaagtcaaattattttcatataagctgtaagct 299  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  22742333 gataaaataaagtcaaattgttttcatataagctataagct 22742373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 29940748 - 29940800
Alignment:
Q  244 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaa 296  Q
    |||||||||| | |||||||||||||||||| || ||||||| ||||||||||    
T  29940748 ttttctataacaaaagataaaataaagtcaatttgttttcatttaagctgtaa 29940800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 367
Target Start/End: Original strand, 30523627 - 30523734
Alignment:
Q  259 gataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacat 358  Q
    |||||||||| |||||||  | |||||||||||| |||| |  ||||||  || ||||| ||||| |||  ||||||| ||||||| |||||||||||||    
T  30523627 gataaaataatgtcaaatcgtcttcatataagctataagttt-tttcataagctatccttgagaggttatagaaattagttgaaaacagcttatgaacat 30523725  T
Q  359 gtcataagt 367  Q
    | |||||||    
T  30523726 ggcataagt 30523734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 1402949 - 1402996
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| | ||||||||||||||| ||| ||||||||||||||||    
T  1402949 tttctataacaaaagataaaataaagttaaactattttcatataagct 1402996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 2027511 - 2027468
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    ||||||||||||||||||| ||||||||||||| || |||||||    
T  2027511 aagataaaataaagtcaaactattttcatataacctataagctg 2027468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 7713990 - 7714025
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7713990 aagataaaataaagtcaaattgttttcatataagct 7714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 11340767 - 11340680
Alignment:
Q  221 catataagtgcttatatatgttatt-ttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||||||||||   ||  |||||||| | ||||||||||||||| || ||||||||||||| ||| |||| || ||||||    
T  11340767 catataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 11340680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 27707602 - 27707555
Alignment:
Q  14 atcaggtaagaaattcatttctaaagtgtctttgcatataaaatgcat 61  Q
    ||||||||||||||| |||| |||||| ||||||||||| ||||||||    
T  27707602 atcaggtaagaaattaatttttaaagtttctttgcatatgaaatgcat 27707555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 27713472 - 27713507
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||| ||||||||||||||    
T  27713472 aagataaaataaagtcaaattcttttcatataagct 27713507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 3204658 - 3204612
Alignment:
Q  246 ttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    |||||||||| |||||||||||||||| || | ||||||||||||||    
T  3204658 ttctataataaaagataaaataaagtcgaactgttttcatataagct 3204612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 4006667 - 4006729
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | | ||||||||||||||||||| |||| ||||||||| |||| || ||||||    
T  4006667 tttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcat 4006729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 366
Target Start/End: Original strand, 6647359 - 6647461
Alignment:
Q  264 aataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcat 363  Q
    ||||||||||||||| ||| ||||| | | ||| ||| ||||||  || ||| ||||||| ||| | |||| | ||||||| | ||||||||||||||||    
T  6647359 aataaagtcaaattactttaatataggttataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcat 6647458  T
Q  364 aag 366  Q
    |||    
T  6647459 aag 6647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 9093661 - 9093611
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||| ||||| ||||| |||||||| ||||||| ||||||    
T  9093661 aagataaaataaagttaaattgttttcgtataagctataagctgttttcat 9093611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 30522541 - 30522475
Alignment:
Q  261 taaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagttta 327  Q
    ||||||||||| ||| |||||||||||||||| ||| ||| ||| ||| || ||||| |||||||||    
T  30522541 taaaataaagtgaaactattttcatataagctataatctgcttttattagctatcctggagagttta 30522475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 9027530 - 9027575
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    |||||| |||||||||||||||||||||||| | |||| |||||||    
T  9027530 tttctacaatagaagataaaataaagtcaaactgttttaatataag 9027575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 14492267 - 14492336
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagttt 326  Q
    |||||||||| |||||||||| |||| ||| ||||| ||||||| ||||||  |  ||||||||||||||    
T  14492267 aagataaaatgaagtcaaattgttttgatacaagctataagctgttttcataagttatcctagagagttt 14492336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 29269849 - 29269886
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattatttt 282  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  29269849 tttctataacagaagataaaataaagtcaaattgtttt 29269886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 1904783 - 1904815
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||||| |||||||||    
T  1904783 ataaaataaagtcaaattatttttatataagct 1904815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 1909016 - 1909048
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||||| |||||||||    
T  1909016 ataaaataaagtcaaattatttttatataagct 1909048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 2514655 - 2514707
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||||| ||||||||||||||||||| || ||| |||| |||| ||||    
T  2514655 tttctataataaaagataaaataaagtcaaactaattttatatgagctataag 2514707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 2735024 - 2735084
Alignment:
Q  247 tctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||| | ||||||||||||||| ||||||||||  ||||| || ||||||| ||||||    
T  2735024 tctataacaaaagataaaataaagttaaattatttttgtataatctataagctgttttcat 2735084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 10452477 - 10452425
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||| | || |||||||||| ||||| |||||||||||||||| ||||    
T  10452477 tttctataacaaaatataaaataaaatcaaactattttcatataagctataag 10452425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 24836316 - 24836272
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||||| | ||||||||||||||||||||| ||||| |||||    
T  24836316 tttctataacaaaagataaaataaagtcaaattgttttcgtataa 24836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 25100014 - 25100118
Alignment:
Q  263 aaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtca 362  Q
    ||||| ||||||||| |||||||| ||| | |||| || ||||||  || ||| || |||| |||  ||||| | |||||||||||  ||||||||||||    
T  25100014 aaatagagtcaaattgttttcatagaagttataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaatagcaaatgaacatgtca 25100113  T
Q  363 taagt 367  Q
    |||||    
T  25100114 taagt 25100118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 31671179 - 31671131
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttc 305  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||||| ||||    
T  31671179 aagataaaacaaagttaaattgttttcatataagctataagctgttttc 31671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 6007 - 5744
Alignment:
Q  14 atcaggtaagaaattcatttctaaagtgtctttgcatataaaatgcatcatcgaacaattttaaaattttcgatatcttttcatttgcatcgccttcaaa 113  Q
    ||||||||||||||| |||| |||||| ||||||||||| |||||||| |  ||| ||| ||||||  |||||||||||||||||||||| | |||||||    
T  6007 atcaggtaagaaattaatttttaaagtttctttgcatatgaaatgcattagtgaaaaatcttaaaaacttcgatatcttttcatttgcattgtcttcaaa 5908  T
Q  114 aagcaaaacaagagatagct-cctaaaatttctaaaattgattattttcattcgcttgtatt----atgtttggataaacaacttaattaagcttacaac 208  Q
    ||||||||   ||||||||| |||||||||||| ||||||| ||||||| ||||  | ||||    |||||| ||| || | |||||||||||||| |      
T  5907 aagcaaaatgggagatagctccctaaaatttctgaaattgactattttcgttcgtgtatattgcccatgtttagattaatagcttaattaagcttatagt 5808  T
Q  209 atagacacttctcatataagtgcttatat--atgttattttctataatagaagataaaataaag 270  Q
    ||| |||||| ||||||||||||||||||  | |||||||||||||||  ||||||||||||||    
T  5807 ataaacacttatcatataagtgcttatatacaagttattttctataattaaagataaaataaag 5744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 18472 - 18437
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18472 aagataaaataaagtcaaattcttttcatataagct 18437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 307
Target Start/End: Original strand, 27457 - 27591
Alignment:
Q  176 tgtttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagt 271  Q
    |||||||||||||||||||| |||  ||||| | ||||  | ||| |||| ||||||||||| |||  ||||||| |||||| |||||||||||||||||    
T  27457 tgtttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttattt-ctataacagaagataaaataaagt 27555  T
Q  272 caaattattttcatataagctgtaagctgatttcat 307  Q
    |||||| ||||||||||| || |||| || ||||||    
T  27556 caaattgttttcatataaactataagttgttttcat 27591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 10357386 - 10357508
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    ||||||||| | |||||||||||| || ||||| |||||||||||| |  ||| || ||||||  || ||| ||||||| |||| ||||| ||| |||||    
T  10357386 tttctataacaaaagataaaataatgttaaatttttttcatataagatacaagttgttttcataagccatcttagagagcttactgaaataactcgaaaa 10357485  T
Q  345 tagcttatgaacatgtcataagt 367  Q
    ||||||||  |||||||||||||    
T  10357486 tagcttatatacatgtcataagt 10357508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 1395624 - 1395671
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  1395624 tttctataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 2201093 - 2201203
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||| ||||||||| | |||||||||||||| ||||||| ||||||| || ||| | || |||||| |||||  |  |||||| || ||||||||    
T  2201093 aagataaaacaaagtcaaactgttttcatataagctataagctgttttcattagctatcttggatagtttaaggaaaaaagctgaaaagagtttatgaac 2201192  T
Q  357 atgtcataagt 367  Q
    || ||||||||    
T  2201193 atatcataagt 2201203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 25195375 - 25195419
Alignment:
Q  243 attttctataatagaagataaaataaagtcaaattattttcatat 287  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  25195375 attttctataacaaaagataaaataaagtcaaattattttcatat 25195419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 368
Target Start/End: Complemental strand, 36646487 - 36646376
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    |||||||||||||||  |||| |||||||||||| | |||  || ||||||  || |||||||||||||||  ||||| |  |||||| |||||||| ||    
T  36646487 aagataaaataaagtataattgttttcatataagttataacttgttttcataagctatcctagagagtttatagaaataagatgaaaacagcttatggac 36646388  T
Q  357 atgtcataagtg 368  Q
    ||| ||||||||    
T  36646387 atgccataagtg 36646376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 237350 - 237464
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    ||||||||| ||||||||||||||| | ||||||| ||||| |||| | |||| || ||||||  |  |||||| |||| |||||||||| |  ||||||    
T  237350 tttctataacagaagataaaataaaataaaattatattcatgtaagttataagttgttttcataagttatcctatagagcttacggaaataagctgaaaa 237449  T
Q  345 tagcttatgaacatg 359  Q
     |||||||| |||||    
T  237450 cagcttatggacatg 237464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 23952223 - 23952161
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | |||||||||| |||||||| ||||||  |||||||||||||||| ||||||    
T  23952223 tttctataacaaaagataaaattaagtcaaagtatttttgtataagctgtaagctgttttcat 23952161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 32555086 - 32555036
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||||||||||| |||||||| |||| || ||||||    
T  32555086 aagataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 48397590 - 48397662
Alignment:
Q  235 tatatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatt 308  Q
    |||| |||||||| ||||||| ||||||||||||||||||||| |||| || |||||| |||| || |||||||    
T  48397590 tataagttatttt-tataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcatt 48397662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 29427688 - 29427644
Alignment:
Q  319 gagagtttacggaaattacttgaaaatagcttatgaacatgtcat 363  Q
    ||||| |||||||||| | ||||||||||||||||||||||||||    
T  29427688 gagagattacggaaataagttgaaaatagcttatgaacatgtcat 29427644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 49587057 - 49586986
Alignment:
Q  221 catataagtgctta-tatatgttattttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    |||||||||||||| |||| | ||||| |||||| | ||||||||||||||||||| | ||||||||||||||    
T  49587057 catataagtgcttactataagctattt-ctataacaaaagataaaataaagtcaaactgttttcatataagct 49586986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 26990687 - 26990730
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatata 288  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||    
T  26990687 tttctataacaaaagataaaataaagtcaaattcttttcatata 26990730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 32703091 - 32703138
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||| ||| ||||||||||||| ||||||| ||||||||||||||    
T  32703091 tttctattataaaagataaaataaactcaaattgttttcatataagct 32703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 21872384 - 21872326
Alignment:
Q  249 tataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||| ||||||||||| |||||||| |||| ||||||||| |||| || ||||||    
T  21872384 tataataggagataaaataaggtcaaatttttttgatataagctataagttgttttcat 21872326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 27792837 - 27792887
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||| |||||| ||||||||||||||||| ||| || ||||||    
T  27792837 aagataaaataaggtcaaactattttcatataagctgcaagttgttttcat 27792887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 38462161 - 38462296
Alignment:
Q  175 atgtttggataaacaacttaattaagct--tacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaag 270  Q
    ||||| |||||||||| ||||||||||   || | |||| |||||| ||||||||||| |||| |||  | ||||| |||||  | ||||||||||||||    
T  38462161 atgttaggataaacaagttaattaagcgcctaaagcataaacacttatcatataagtgtttatttataagctattt-ctataccaaaagataaaataaag 38462259  T
Q  271 tcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||| | |||||||||| ||| ||| ||| ||||||    
T  38462260 tcaaactgttttcatatatgctataaactgttttcat 38462296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 10101593 - 10101548
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||||    
T  10101593 tttctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 10212518 - 10212473
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||||    
T  10212518 tttctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 20143866 - 20143921
Alignment:
Q  232 ttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||||    
T  20143866 ttatataagttattt-ctataataaaagataaaat-aagtcaaactattttcatataa 20143921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 21367824 - 21367869
Alignment:
Q  262 aaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||||| | |||||||||||||||||| ||| ||||||    
T  21367824 aaaataaagtcaaaatgttttcatataagctgtaaactgttttcat 21367869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 289
Target Start/End: Complemental strand, 23269323 - 23269268
Alignment:
Q  232 ttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||||    
T  23269323 ttatataagttattt-ctataataaaagataaaat-aagtcaaactattttcatataa 23269268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 42808932 - 42808981
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||| | ||||||||||||||| ||||| |||| |||||||||||    
T  42808932 tttctataacaaaagataaaataaagttaaattgtttttatataagctgt 42808981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 42809254 - 42809303
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||| | ||||||||||| ||| ||||| ||||||||||||||||    
T  42809254 tttctataacaaaagataaaatatagttaaattgttttcatataagctgt 42809303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 53736230 - 53736185
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||| | |||||||||||| |||||| ||||||||||||||    
T  53736230 tttctataacaaaagataaaataatgtcaaactattttcatataag 53736185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 367
Target Start/End: Complemental strand, 3044342 - 3044254
Alignment:
Q  279 ttttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataagt 367  Q
    ||||||||||| || ||| ||| |||| | ||| | ||| ||||| ||| | |||| | ||||||| ||||||||||||||||||||||    
T  3044342 ttttcatataatctataacctgttttcttatgctaacctggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagt 3044254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 15304464 - 15304420
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||||| | ||||||||||||||| ||||| |||||||||||    
T  15304464 tttctataacaaaagataaaataaagttaaattgttttcatataa 15304420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 23315591 - 23315631
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||||||||||||||| |||||||||| ||| ||||    
T  23315591 aagataaaataaagtcaaattgttttcatataggctataag 23315631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 39971200 - 39971309
Alignment:
Q  176 tgtttggataaacaacttaattaagct--tacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagt 271  Q
    ||||||||| ||||| |||||||||||  || |||||  |||||| |||||||||||||||| |||  |||| ||  ||||| | ||||||||||||||     
T  39971200 tgtttggattaacaatttaattaagctcttataacatcaacacttatcatataagtgcttatgtataagttactta-tataacaaaagataaaataaagc 39971298  T
Q  272 caaattatttt 282  Q
    |||||| ||||    
T  39971299 caaattgtttt 39971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 54965459 - 54965503
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    |||| |||||| |||||||||||||||||||  ||||||||||||    
T  54965459 tttcaataatataagataaaataaagtcaaacaattttcatataa 54965503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 33942115 - 33942225
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||||||||||||| | ||||||| |||||| |||| || ||||||  || ||| ||||||| | | | ||||||  |||||| |||||||||||    
T  33942115 aagataaaataaagtcaaactgttttcatgtaagctataagttgttttcataagccatcatagagagctaatgaaaattagctgaaaacagcttatgaac 33942214  T
Q  357 atgtcataagt 367  Q
    |||||||||||    
T  33942215 atgtcataagt 33942225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 367
Target Start/End: Complemental strand, 1939470 - 1939327
Alignment:
Q  223 tataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatata-agctgtaagctgatttcatttgcaatcctagag 321  Q
    |||||| || |||||| ||||||| |||||| | ||||||||||||||| ||| |||||||||||  |||| ||| ||| ||||||  || || || |||    
T  1939470 tataagcgcatatataagttattt-ctataacaaaagataaaataaagtgaaactattttcatattgagctataa-ctgttttcataagctatactggag 1939373  T
Q  322 agtttacggaaattacttgaaaatagcttatgaacatgtcataagt 367  Q
    || ||| |||||| | ||||||| |||||||| |||||||||||||    
T  1939372 agcttatggaaataagttgaaaacagcttatggacatgtcataagt 1939327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 17952850 - 17952771
Alignment:
Q  214 cacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||| ||||||||| ||||||||||  | ||||| |||||| | ||||||||||||||||||| ||||||||||||||||    
T  17952850 cacttatcatataagagcttatatataagctattt-ctataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 360
Target Start/End: Complemental strand, 22681290 - 22681187
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||| |||| |||||| |||||||||||||| ||||||| ||||||   | ||||||||||  ||| |||||| |  | |||| |||||||||||    
T  22681290 aagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaac 22681191  T
Q  357 atgt 360  Q
    ||||    
T  22681190 atgt 22681187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 656894 - 656832
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | ||||||||||| | ||||||| ||||| ||||||||||||| |||||||||    
T  656894 tttctataacaaaagataaaatataatcaaattgttttcgtataagctgtaagttgatttcat 656832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 11513863 - 11513913
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||||| |||||||||||||| |||| || ||||||    
T  11513863 aagataaaataaagtcaaattgttttcatataagctataagttgttttcat 11513913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 43141836 - 43141946
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    |||||||| |||||||||||| ||| |||||||||| |||| || ||||||  || |||||  |||||||| |||||| |  |||||| | ||||||  |    
T  43141836 aagataaagtaaagtcaaattgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggc 43141935  T
Q  357 atgtcataagt 367  Q
    |||||||||||    
T  43141936 atgtcataagt 43141946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 1160846 - 1160798
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt 309  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  1160846 ataaaataaagtcaaactattttcatataagctataagct-atttcattt 1160798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 259 - 292
Target Start/End: Original strand, 43173189 - 43173222
Alignment:
Q  259 gataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||||||||||||||||    
T  43173189 gataaaataaagtcaaattattttcatataagct 43173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 3423873 - 3423841
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataa 289  Q
    |||||||||||||||||||||||||||||||||    
T  3423873 aagataaaataaagtcaaattattttcatataa 3423841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 8017401 - 8017449
Alignment:
Q  259 gataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||| ||||| |||||||||||||||||||||||| ||| ||||||    
T  8017401 gataaaacaaagttaaattattttcatataagctgtaaactgttttcat 8017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 25609749 - 25609801
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||| | |||||||||||||||||| |||||||| |||||||| ||||    
T  25609749 tttctataagaaaagataaaataaagtcaatttattttcgtataagctataag 25609801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 31740064 - 31740024
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  31740064 aagataaaataaagtcaaactattttcatataagctataag 31740024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 283
Target Start/End: Original strand, 6988067 - 6988106
Alignment:
Q  244 ttttctataatagaagataaaataaagtcaaattattttc 283  Q
    |||||||||| | |||||||||||||||||||||||||||    
T  6988067 ttttctataacaaaagataaaataaagtcaaattattttc 6988106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 9478252 - 9478299
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| || |||||||||||| ||||| ||||||||||||||||    
T  9478252 tttctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 20059099 - 20059142
Alignment:
Q  249 tataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    |||||||| ||||||||||||||| ||||| |||||||||||||    
T  20059099 tataatagtagataaaataaagtctaattactttcatataagct 20059142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 28803649 - 28803576
Alignment:
Q  220 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||  ||||||| | |||| | ||||||||||||||||||| |  |||||||||||||    
T  28803649 tcatataagtgcttatatataagttattt-cgataacaaaagataaaataaagtcaaactgatttcatataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 366
Target Start/End: Complemental strand, 29316882 - 29316771
Alignment:
Q  255 agaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatga 354  Q
    |||||||||||||| || ||||| |||||| |||| || ||||||| ||||||  || ||| | ||||  ||| |||||| |  |||||| | |||||||    
T  29316882 agaagataaaataaggttaaattgttttcacataatctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatga 29316783  T
Q  355 acatgtcataag 366  Q
    ||||||||||||    
T  29316782 acatgtcataag 29316771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 3458606 - 3458659
Alignment:
Q  240 gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    |||||||| ||||| | ||||||||||||||||||| | ||||||||||||||||    
T  3458606 gttatttt-tataacaaaagataaaataaagtcaaacttttttcatataagctgt 3458659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 366
Target Start/End: Complemental strand, 18179346 - 18179236
Alignment:
Q  257 aagataaaataaagtcaaatt-attttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 355  Q
    |||| |||||||| ||||||  ||||||||||||||| ||||||| ||||||  || ||||| ||||  ||||| |||| |  ||||||||||| ||| |    
T  18179346 aagaaaaaataaaatcaaatacattttcatataagctataagctgctttcataagctatcctggagaacttacgaaaataagctgaaaatagctaatgga 18179247  T
Q  356 catgtcataag 366  Q
    |||||| ||||    
T  18179246 catgtcttaag 18179236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 366
Target Start/End: Original strand, 37053547 - 37053669
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcct-agagagtttacggaaattacttgaaa 343  Q
    ||||||||| |||| |||||||||||||||| | |||||||||||| | |||| |  ||||||| || ||| | | | |||| |  |||||||| |||||    
T  37053547 tttctataacagaaaataaaataaagtcaaactgttttcatataagttataagtttttttcattagctatcatgaaaaagttcatagaaattacctgaaa 37053646  T
Q  344 atagcttatgaacatgtcataag 366  Q
    | |||||||| || |||||||||    
T  37053647 agagcttatggacgtgtcataag 37053669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 3673734 - 3673805
Alignment:
Q  220 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    |||||||||||||||| |||  ||||||| |||||| | || |||||||||||| ||||| ||||||||||||    
T  3673734 tcatataagtgcttatgtattagttattt-ctataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 33192146 - 33192191
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||| | ||||||||||||||||||| | ||||||||||||    
T  33192146 tttctataacataagataaaataaagtcaaactgttttcatataag 33192191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 33944573 - 33944622
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt 309  Q
    |||||||||||||||||| |||||||||||||| |||  || ||||||||    
T  33944573 ataaaataaagtcaaattgttttcatataagctataaattgttttcattt 33944622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 34339871 - 34339904
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||||||||||||||||||||| ||||||    
T  34339871 aagataaaataaagtcaaattattttcgtataag 34339904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 9395082 - 9395146
Alignment:
Q  244 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatt 308  Q
    |||||||||  | ||||||||||||||  ||||| ||||||||||| || ||||||| |||||||    
T  9395082 ttttctatagaaaaagataaaataaagctaaattgttttcatataatctataagctgttttcatt 9395146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 10646394 - 10646362
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataa 289  Q
    ||||||||||||||||||||||||||| |||||    
T  10646394 aagataaaataaagtcaaattattttcctataa 10646362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 18066099 - 18066143
Alignment:
Q  263 aaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| ||||| |||||||||||||| ||||||| ||||||    
T  18066099 aaataaagttaaattgttttcatataagctataagctgttttcat 18066143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 29643511 - 29643471
Alignment:
Q  267 aaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||| ||||||||||||| ||||||| ||||||    
T  29643511 aaagtcaaattactttcatataagctctaagctgttttcat 29643471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 33197428 - 33197327
Alignment:
Q  176 tgtttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgctta--tatatgttattttctataatagaagataaaataaagt 271  Q
    ||||||||||||||||| ||||||   |||| |||||| || ||| |||||||||||||||  |||| | || ||||||||| | |||||| ||||||||    
T  33197428 tgtttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagcta-tttctataacaaaagatagaataaagt 33197330  T
Q  272 caa 274  Q
    |||    
T  33197329 caa 33197327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 323
Target Start/End: Complemental strand, 28340985 - 28340883
Alignment:
Q  222 atataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctag 319  Q
    ||||||||||||||  ||||| |||||| ||||||| ||||| |||| |||||||||| || ||||||||||| ||||||| ||||||  || |||||||    
T  28340985 atataagtgcttatctatatgctatttt-tataataaaagatgaaatgaagtcaaattgttgtcatataagctataagctgttttcataagctatcctag 28340887  T
Q  320 agag 323  Q
    ||||    
T  28340886 agag 28340883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 303
Target Start/End: Complemental strand, 12835126 - 12834996
Alignment:
Q  176 tgtttggataaacaacttaattaagc--ttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagt 271  Q
    |||||||||||||||||| |||||||  ||| |||||| || |||  | ||| |||||||||  | ||| ||||| ||| || | |||||||||||||||    
T  12835126 tgtttggataaacaacttgattaagcgcttataacataaacgcttagcgtatgagtgcttatgcagatgctattt-ctacaacaaaagataaaataaagt 12835028  T
Q  272 caaattattttcatataagctgtaagctgatt 303  Q
    |||||| ||||||||| |||| ||||||||||    
T  12835027 caaattgttttcatattagctataagctgatt 12834996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 27121703 - 27121654
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  27121703 tttctataataaatgataaaataaagtcaaattgttttcatataagctgt 27121654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 31002726 - 31002769
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  31002726 aagataaaataaagtcaaaatattttcatataagctataagctg 31002769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 360
Target Start/End: Original strand, 38010679 - 38010782
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||| |||| |||||| |||||||||||||| ||||||| ||||||   | ||||||||||  ||| |||||| |  | |||| |||||||||||    
T  38010679 aagataaaacaaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagcttatgaac 38010778  T
Q  357 atgt 360  Q
    ||||    
T  38010779 atgt 38010782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 40689091 - 40689048
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  40689091 aagataaaataaagttaaattattttcatataagctataagctg 40689048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 22388092 - 22387979
Alignment:
Q  177 gtttggataaacaacttaattaa--gcttacaacatagacacttctcatataagtgcttat--atatgttattttctataatagaagataaa---ataaa 269  Q
    |||||||||||||||||||||||  ||||| |||||| |||||| |||| |||||||||||  ||| | || ||||||||| | ||||||||   |||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagcta-tttctataacaaaagataaaagtataaa 22387994  T
Q  270 gtcaaattattttca 284  Q
    |||||||| ||||||    
T  22387993 gtcaaattcttttca 22387979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 35536060 - 35536114
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagct 299  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||| | ||||||    
T  35536060 tttctataacataagataaaataaagtcaaattgttttcatataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 30134014 - 30134063
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttca 306  Q
    |||||||||||||||||| || ||||| |||||||| |||||||||||||    
T  30134014 aagataaaataaagtcaacttgttttcgtataagctttaagctgatttca 30134063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 39591584 - 39591539
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||| | ||||||||||||||||||||| ||||||||||||    
T  39591584 tttctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 46825052 - 46825097
Alignment:
Q  246 ttctataatagaagataaaataaagtcaaattattttcatataagc 291  Q
    |||||||| | ||||||||||||||||||||| |||||||||||||    
T  46825052 ttctataaaaaaagataaaataaagtcaaattgttttcatataagc 46825097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 3501079 - 3501039
Alignment:
Q  249 tataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  3501079 tataataaaagataaaataaagtcaaatcattttcatataa 3501039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 357
Target Start/End: Original strand, 28165044 - 28165156
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    ||||||||| | |||||||||| |||||||||| |||| ||||||||| ||| |||  || ||  || ||| | ||||| ||| |||||| | |||||||    
T  28165044 tttctataacaaaagataaaatgaagtcaaattgttttaatataagctataaactgtctttataagctatcatggagagcttatggaaataagttgaaaa 28165143  T
Q  345 tagcttatgaaca 357  Q
     ||||||||||||    
T  28165144 cagcttatgaaca 28165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 49060493 - 49060545
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||| | || ||||||||||||||||||||||| ||||||||| ||||    
T  49060493 tttctataacaaaaaataaaataaagtcaaattatttttatataagctataag 49060545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 3802278 - 3802212
Alignment:
Q  222 atataagtgcttatatatgttattttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    |||||||||||| |||| | ||||| |||||||| ||| ||||||||||||||||  |||||||||||    
T  3802278 atataagtgcttgtataagctattt-ctataataaaaggtaaaataaagtcaaatcgttttcatataa 3802212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 23918922 - 23918957
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23918922 aagataaaataaagtcaaattgttttcatataagct 23918957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 300
Target Start/End: Complemental strand, 39908099 - 39908056
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    |||||||||||||||||||| ||| ||||||||||| |||||||    
T  39908099 aagataaaataaagtcaaataattatcatataagctataagctg 39908056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 48157237 - 48157190
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||| ||||||||||||||| ||||| |||| |||||||||    
T  48157237 tttctataataaaagataaaataaagtgaaattgttttaatataagct 48157190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 1417229 - 1417263
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagc 291  Q
    ||||||||||||||||||||| |||||||||||||    
T  1417229 aagataaaataaagtcaaattgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 12110325 - 12110375
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||| ||||||    
T  12110325 aagataaaataaagtcaaattgttttggtataagctataagctgttttcat 12110375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 22759151 - 22759201
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||  ||||| ||||||||||||||  |||||||||||||    
T  22759151 aagataaaataaaggaaaattgttttcatataagctaaaagctgatttcat 22759201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 27548228 - 27548278
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||||||| |||| ||||||| |||||| ||||||| ||||||    
T  27548228 aagataaaataaagtctaattgttttcatttaagctataagctgttttcat 27548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 18749927 - 18749878
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||| | |||||||| |||||||||| |||||| |||||||||||    
T  18749927 tttctataacaaaagataaagtaaagtcaaactatttttatataagctgt 18749878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 22388611 - 22388547
Alignment:
Q  178 tttggataaacaacttaattaa--gcttacaacatagacacttc-tcatataagtgcttatatat 239  Q
    ||||||||||||||||||||||  ||||| |||||||||  ||| |||||||||| |||||||||    
T  22388611 tttggataaacaacttaattaaacgcttataacatagacgtttcatcatataagtacttatatat 22388547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 24909638 - 24909679
Alignment:
Q  266 taaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||||||||||| |||| || ||||||    
T  24909638 taaagtcaaattattttcatataagctataagttgttttcat 24909679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 30456555 - 30456522
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||||||||||||||| ||||||||||||    
T  30456555 aagataaaataaagtcaaattgttttcatataag 30456522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 40428523 - 40428564
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctga 301  Q
    |||||||||||| |||||||||||||||||||| ||| ||||    
T  40428523 ataaaataaagttaaattattttcatataagctataaactga 40428564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 292
Target Start/End: Complemental strand, 47046211 - 47046178
Alignment:
Q  259 gataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||| ||||||||||||||    
T  47046211 gataaaataaagtcaaattgttttcatataagct 47046178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 5269483 - 5269519
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattt 281  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  5269483 tttctttaataaaagataaaataaagtcaaattattt 5269519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 24895330 - 24895370
Alignment:
Q  266 taaagtcaaattattttcatataagctgtaagctgatttca 306  Q
    ||||||||||||||||||||||||||| |||| || |||||    
T  24895330 taaagtcaaattattttcatataagctataagttgttttca 24895370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 30751485 - 30751513
Alignment:
Q  260 ataaaataaagtcaaattattttcatata 288  Q
    |||||||||||||||||||||||||||||    
T  30751485 ataaaataaagtcaaattattttcatata 30751513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 43318645 - 43318597
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctg 293  Q
    ||||||||| | | ||||||||||||||||||| || ||||||||||||    
T  43318645 tttctataacaaatgataaaataaagtcaaattgttatcatataagctg 43318597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 4071835 - 4071887
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  4071835 tttctataacaaaagataaaataaagtcaaattattttcatataagctataag 4071887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 8130127 - 8130189
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||| ||| ||| ||||||    
T  8130127 tttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcat 8130189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 49219092 - 49219154
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||| |||| || ||||||    
T  49219092 tttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcat 49219154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 251 - 367
Target Start/End: Original strand, 11264260 - 11264376
Alignment:
Q  251 taatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagctt 350  Q
    ||||| ||||||||||||| |||  |||| |||||||| | | |||| || ||||||  || ||||||||||| ||| |||||| | ||||||| || ||    
T  11264260 taataaaagataaaataaactcatgttatattcatatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagttt 11264359  T
Q  351 atgaacatgtcataagt 367  Q
    ||| |||||||||||||    
T  11264360 atggacatgtcataagt 11264376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 289
Target Start/End: Original strand, 36734784 - 36734890
Alignment:
Q  186 aacaacttaattaa--gcttacaacatagacacttctcatataagtgcttatatatgttat-tttctataatagaagataaaataaagtcaaattatttt 282  Q
    ||||||||||||||  ||||| |||||| ||  || |||||||||||||||| |||  | | ||||||||| | ||| ||||||||||||||| ||||||    
T  36734784 aacaacttaattaaaagcttataacatatacctttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaataaagtcaaactatttt 36734883  T
Q  283 catataa 289  Q
    |||||||    
T  36734884 catataa 36734890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 53626728 - 53626791
Alignment:
Q  244 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||| | ||||||||||||| ||||| | |||||||||||||| ||||||| ||||||    
T  53626728 ttttctataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcat 53626791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 367
Target Start/End: Complemental strand, 6466151 - 6466041
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||| ||||||||| ||||| ||||  ||||| || |||| || || |||  || || |||||||| ||| |||||| | |||||||||||||||||||    
T  6466151 aagatcaaataaagtgaaattctttttgtataatctataagttgtttccataagctattctagagagattatggaaataagttgaaaatagcttatgaac 6466052  T
Q  357 atgtcataagt 367  Q
    || ||||||||    
T  6466051 atctcataagt 6466041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 366
Target Start/End: Original strand, 1137665 - 1137786
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    |||||||||||  | |||||||||||||| ||||||||   |||| || ||||||| ||||||   | |||| |||||| ||| |||||| |  ||||||    
T  1137665 tttctataataccatataaaataaagtcatattatttttgaataatctataagctgctttcataaactatccaagagagcttatggaaataaactgaaaa 1137764  T
Q  345 tagcttatgaacatgtcataag 366  Q
     | |||||||||||||||||||    
T  1137765 caacttatgaacatgtcataag 1137786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 7022592 - 7022662
Alignment:
Q  217 ttctcatataagtgctta--tatatgttattttctataatagaagataaaataaagtcaaattattttcata 286  Q
    ||||||||||||||||||  |||| | |||||| ||||| | ||||||||||| ||||||||||||||||||    
T  7022592 ttctcatataagtgcttaattataagctatttt-tataagaaaagataaaatagagtcaaattattttcata 7022662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 11917524 - 11917556
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataa 289  Q
    |||||||||||||||||||||||||||||||||    
T  11917524 aagataaaataaagtcaaattattttcatataa 11917556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 13949949 - 13949909
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  13949949 aagataaaataaagtcaaattgttttcatataagctataag 13949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 24091434 - 24091478
Alignment:
Q  263 aaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||    
T  24091434 aaataaagtcaaattattttcatataagctataaactgttttcat 24091478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 54325142 - 54325034
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||||||||||||| | |||||||||||||| ||||||  |||||   || ||| | ||||||||| ||| || |  |||||| |||||||| ||    
T  54325142 aagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatcatggagagtttatggagataaactgaaaacagcttatggac 54325043  T
Q  357 atgtcataa 365  Q
    || ||||||    
T  54325042 atatcataa 54325034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 55437388 - 55437356
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagct 292  Q
    |||||||||||||||||||||||||||||||||    
T  55437388 ataaaataaagtcaaattattttcatataagct 55437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 363
Target Start/End: Complemental strand, 7694116 - 7694009
Alignment:
Q  256 gaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaa 355  Q
    |||||| |||| |||||||| | ||||  |||||||| ||||||| ||||||  |  ||||| ||||||||| |||||| |  |||||| | ||||||||    
T  7694116 gaagatgaaatgaagtcaaactgtttttgtataagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatgaa 7694017  T
Q  356 catgtcat 363  Q
    ||||||||    
T  7694016 catgtcat 7694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 20936119 - 20936072
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| | ||||||||||||||||||| ||||||||| ||||||    
T  20936119 tttctataacaaaagataaaataaagtcaaactattttcatgtaagct 20936072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 30024653 - 30024700
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  30024653 tttctataacaaaagataaaataaagtaaaattgttttcatataagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 32724084 - 32724123
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaa 296  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  32724084 aagataaaataaagtcaaactattttcatataagccgtaa 32724123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 2996538 - 2996648
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||||| ||||||||| |||| ||||||| | |||| || ||||||  || ||| | |||||  || | |||| | ||||||| |||||||| ||    
T  2996538 aagataaaatacagtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggac 2996637  T
Q  357 atgtcataagt 367  Q
    |||||||||||    
T  2996638 atgtcataagt 2996648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 5219615 - 5219573
Alignment:
Q  247 tctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||    
T  5219615 tctataataaaagataaaataaagttaaactattttcatataa 5219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 20936330 - 20936224
Alignment:
Q  261 taaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgt 360  Q
    |||||| |||||||||| |||| |||||| || || | || |||||| | | ||||| ||||| ||| |||||| |  |||||| ||||||||||||| |    
T  20936330 taaaatgaagtcaaattgtttttatataatctataggttgttttcatattctatcctggagagattatggaaataaggtgaaaacagcttatgaacatat 20936231  T
Q  361 cataagt 367  Q
    |||||||    
T  20936230 cataagt 20936224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 21952930 - 21952968
Alignment:
Q  261 taaaataaagtcaaattattttcatataagctgtaagct 299  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  21952930 taaaataaagtcaaattgttttcatataagctataagct 21952968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 327
Target Start/End: Original strand, 35958608 - 35958690
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagttta 327  Q
    ||||||||| | ||| |||||||||||||||||  ||| |||||||||  |||||| ||||||  || ||||| |||||||||    
T  35958608 tttctataacataagttaaaataaagtcaaatttgttttatataagctagaagctgttttcataagctatcctggagagttta 35958690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 22684617 - 22684584
Alignment:
Q  261 taaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||||||||||| ||||||||||||||||    
T  22684617 taaaataaagtcaaattgttttcatataagctgt 22684584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 29467673 - 29467620
Alignment:
Q  313 atcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataag 366  Q
    ||||||||||||||| |||||| |  |||||| |||||||| ||||||||||||    
T  29467673 atcctagagagtttatggaaataagctgaaaacagcttatggacatgtcataag 29467620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 364
Target Start/End: Complemental strand, 30207719 - 30207569
Alignment:
Q  214 cacttctcatataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgc 311  Q
    ||||| ||||||||||||||||  |||||||| || |||||| | || |||||||||| ||||| | |||||||||||||| |||| || ||||||  ||    
T  30207719 cacttatcatataagtgcttatgtatatgttagtt-ctataacaaaaaataaaataaa-tcaaactgttttcatataagctataagttgttttcataagc 30207622  T
Q  312 aatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcata 364  Q
     | | ||||||| ||| |||||| |  |||||| ||||||   ||||||||||    
T  30207621 taccttagagagattatggaaataagctgaaaacagcttacagacatgtcata 30207569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 31038984 - 31038939
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    |||||| ||||  |||||||||||||||||||| ||||||||||||    
T  31038984 tttctacaataatagataaaataaagtcaaattgttttcatataag 31038939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 41701546 - 41701509
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  41701546 aagataaaataaagtcaaatcgttttcatataagctgt 41701509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 52294106 - 52294042
Alignment:
Q  224 ataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcata 286  Q
    ||||||||||||||||  ||| ||||||||||   ||||||||||||||| ||||| ||||||||    
T  52294106 ataagtgcttatatataagttgttttctataaccaaagataaaataaagtgaaattgttttcata 52294042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 52735087 - 52735120
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataag 290  Q
    |||||||||||||||||||||| |||||||||||    
T  52735087 aagataaaataaagtcaaattactttcatataag 52735120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 53315297 - 53315394
Alignment:
Q  263 aaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgt 360  Q
    ||||||| ||||| |||||||||||||||| ||||||| | |||    ||| ||||||||| ||| | |||| | || ||||||||||||| ||||||    
T  53315297 aaataaattcaaactattttcatataagctataagctgttctcaaaaacaaacctagagagcttatgaaaataagttaaaaatagcttatggacatgt 53315394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 27623600 - 27623640
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||||||||||||| |||||| ||||||||| ||||    
T  27623600 aagataaaataaagtcaaactattttaatataagctataag 27623640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 349
Target Start/End: Original strand, 44319914 - 44320006
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagct 349  Q
    |||||||||||||||| || | ||||||||||||||  |||||  ||| ||  || ||||||||||  ||| | |||||| ||||||||||||    
T  44319914 aagataaaataaagtcgaactgttttcatataagctacaagctattttgataagctatcctagagaacttatgaaaattagttgaaaatagct 44320006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 15361676 - 15361728
Alignment:
Q  255 agaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||    
T  15361676 agaagataaagtaaagtcaaattattttcatataagctataagctgttttcat 15361728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 7218191 - 7218069
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    |||| |||||| ||| ||||||||||||||||| |||||||||||||| |||| || ||||||   | ||||| ||||  ||| | |||| | |||||||    
T  7218191 tttccataataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaa 7218092  T
Q  345 tagcttatgaacatgtcataagt 367  Q
     ||||| ||||| ||||||||||    
T  7218091 cagcttgtgaacgtgtcataagt 7218069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 49517023 - 49517085
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||||||    
T  49517023 tttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcat 49517085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 1879144 - 1879095
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgt 294  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  1879144 tttctataacagaagataaaataaagtcaaaatgttttcatataagctgt 1879095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 366
Target Start/End: Original strand, 17269177 - 17269324
Alignment:
Q  220 tcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcct 317  Q
    |||||||||||||||| |||  ||||||| ||| || | |||  |||||||||||||||| |||||||||||||  |||| || ||||||  || |||||    
T  17269177 tcatataagtgcttatgtataagttattt-ctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcct 17269275  T
Q  318 agagagtttacggaaattacttgaaaatagcttatgaacatgtcataag 366  Q
     ||||| |||||| ||| | || |||| | || ||||||||||||||||    
T  17269276 ggagagcttacggtaataagttaaaaacaactcatgaacatgtcataag 17269324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 45234150 - 45234191
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcata 286  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  45234150 tttctataataaaagataaaataaagtcaaattattttcata 45234191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 25006152 - 25006089
Alignment:
Q  244 ttttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||| ||| | ||||||||||||||||| |||||||||||||| |||| || ||||||    
T  25006152 ttttctataacagacggtaaaataaagtcaaattgttttcatataagctataagttgttttcat 25006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 28467412 - 28467377
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||||||||||||||||||||||||    
T  28467412 aagataaaataaagtcaaattattttcatataagct 28467377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 15437916 - 15438038
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    ||||||||| | || ||||||| |||||||| | |||||| || |||   ||| || ||||||  || ||||| |||||||||||||||| |  |||||     
T  15437916 tttctataacaaaaaataaaattaagtcaaactgttttcaaatcagccagaagttgttttcataggctatcctcgagagtttacggaaataagctgaaag 15438015  T
Q  345 tagcttatgaacatgtcataagt 367  Q
    || ||||||||||||||||||||    
T  15438016 taacttatgaacatgtcataagt 15438038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 27738300 - 27738250
Alignment:
Q  242 tattttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| || | ||||||||||||||||||||| ||||||||||||||    
T  27738300 tattttctacaacaaaagataaaataaagtcaaattgttttcatataagct 27738250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 33204493 - 33204443
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||| || |||||||| |||||||||||||||| ||||||    
T  33204493 aagataaaataaagttaatttattttcgtataagctgtaagctgttttcat 33204443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 363
Target Start/End: Complemental strand, 44032116 - 44031998
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    ||||||||| | ||| ||||||||||||||||| |||||||||||||| ||| ||  |||| |  |  ||| |  |||| ||| ||||||||  ||||||    
T  44032116 tttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttcttaagttatcttgaagagcttatggaaattagctgaaaa 44032017  T
Q  345 tagcttatgaacatgtcat 363  Q
    ||||||||| |||||||||    
T  44032016 tagcttatggacatgtcat 44031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 48830181 - 48830131
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||| |||||||||||||||| ||| ||| ||||||    
T  48830181 aagataaaataaagtcaaactattttcatataagctataaactgttttcat 48830131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 4200150 - 4200229
Alignment:
Q  214 cacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||| |||| |||||| ||||||||  |||||||| ||||| | |||||||||||||||||| || ||||||||||||||    
T  4200150 cacttatcatctaagtgtttatatataagttatttt-tataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 9656618 - 9656658
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  9656618 ataaaataaagttaaattattttcatataagctataagctg 9656658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 15360847 - 15360899
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||| ||||    
T  15360847 tttctataacaaaagataaaataaagtcaaactgttttcatataagctataag 15360899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 25479546 - 25479654
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    |||||||||||| |||||||| | |||||||| ||| |||| || ||||||  || ||||||||||| ||| | |||| |  |||||| | || ||||||    
T  25479546 aagataaaataacgtcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaac 25479645  T
Q  357 atgtcataa 365  Q
    |||||||||    
T  25479646 atgtcataa 25479654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 7274082 - 7274001
Alignment:
Q  220 tcatataagtgcttat--atatgttattttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    |||||||| |||||||  |||||||||||| ||||| | ||||| ||||||||||||||| |||||||| ||| | |||||||    
T  7274082 tcatataaatgcttatgtatatgttatttt-tataacaaaagatgaaataaagtcaaattgttttcatacaagttataagctg 7274001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 10439651 - 10439686
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagct 292  Q
    |||||||||| |||||||||||||||||||||||||    
T  10439651 aagataaaatgaagtcaaattattttcatataagct 10439686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 365
Target Start/End: Original strand, 35017531 - 35017649
Alignment:
Q  249 tataatagaagataaaataaagtcaaat--tattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaata 346  Q
    ||||||| |||||||||||||||||||   | ||||| ||||| || || |||| ||||||  ||  |||| ||||| ||| |||||| | |||||||||    
T  35017531 tataatacaagataaaataaagtcaaacactgttttcgtataatctatatgctgttttcataagctgtcctggagagcttatggaaataagttgaaaata 35017630  T
Q  347 gcttatgaacatgtcataa 365  Q
     |||||| |||||||||||    
T  35017631 acttatggacatgtcataa 35017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 35925717 - 35925764
Alignment:
Q  319 gagagtttacggaaattacttgaaaatagcttatgaacatgtcataag 366  Q
    ||||||||| |||||| | ||||||| |||||||||||||||||||||    
T  35925717 gagagtttatggaaataagttgaaaacagcttatgaacatgtcataag 35925764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 44936707 - 44936660
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| | ||||||| ||||||||||| ||||||||||||||||    
T  44936707 tttctataacaaaagataagataaagtcaaactattttcatataagct 44936660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 6262057 - 6262095
Alignment:
Q  329 ggaaattacttgaaaatagcttatgaacatgtcataagt 367  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  6262057 ggaaataagttgaaaatagcttatgaacatgtcataagt 6262095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 29007833 - 29007771
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | |||| ||| |||||||||| |||||||||||||||| |||| || ||||||    
T  29007833 tttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Original strand, 30371113 - 30371163
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||| ||||||| |||||||||||||| |||| || ||||||    
T  30371113 aagataaaataaactcaaattgttttcatataagctataagttgttttcat 30371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 30815753 - 30815707
Alignment:
Q  244 ttttctataatagaagataaaataaagtcaaattattttcatataag 290  Q
    |||||||||| | ||||||||||||||| ||| ||||||||||||||    
T  30815753 ttttctataacaaaagataaaataaagttaaactattttcatataag 30815707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 45204994 - 45205068
Alignment:
Q  219 ctcatataagtgcttatatatgttattt-tctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||| ||| ||||  || | ||||| ||| ||||||||||||||||||| ||||| ||||||||||    
T  45204994 ctcatataagtgcgtatgtatgaaatatatctatgataaaagataaaataaagtcaaactatttccatataagct 45205068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 49557021 - 49557156
Alignment:
Q  175 atgtttggataaacaacttaattaag--cttacaacatagacacttctcatataagtgct--tatatatgttattttctataatagaagataaaataaag 270  Q
    |||| |||||||||| ||||||||||  |||| ||| ||  ||||| |||||||||||||  | |||| ||||||| |||||| | ||||||||||||||    
T  49557021 atgtatggataaacagcttaattaagtgcttataacgtaatcacttatcatataagtgctgctgtataagttattt-ctataacaaaagataaaataaag 49557119  T
Q  271 tcaaattattttcatataagctgtaagctgatttcat 307  Q
    | ||||  | ||||| |||||| |||| || ||||||    
T  49557120 ttaaatagtattcatttaagctataagttgttttcat 49557156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 4363815 - 4363702
Alignment:
Q  180 tggataaacaacttaattaa-gcttacaacatagacacttctcatataagtgcttatatatgttattttctataatagaagataaaataaagtcaaatta 278  Q
    |||| ||||| ||||||||  ||||| | |||| |||||| |||||||||||||||| |||  | | || ||||| | ||||| |||||| |||||| |     
T  4363815 tggaaaaacatcttaattaccgcttatagcataaacacttgtcatataagtgcttatgtatactctattttataacaaaagattaaataatgtcaaactg 4363716  T
Q  279 ttttcatataagct 292  Q
    ||||||||||||||    
T  4363715 ttttcatataagct 4363702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 366
Target Start/End: Complemental strand, 10199513 - 10199404
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaac 356  Q
    ||||||||||||||||||| ||||||| ||||| |  ||||||  ||||||  || ||  ||||||| ||| | |||| |  |||||| | |||||||||    
T  10199513 aagataaaataaagtcaaactattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaac 10199414  T
Q  357 atgtcataag 366  Q
    ||||||||||    
T  10199413 atgtcataag 10199404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 14737822 - 14737781
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcata 286  Q
    ||||||||| | ||||||||||||||||||||| ||||||||    
T  14737822 tttctataacaaaagataaaataaagtcaaattgttttcata 14737781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 367
Target Start/End: Original strand, 23445380 - 23445409
Alignment:
Q  338 ttgaaaatagcttatgaacatgtcataagt 367  Q
    ||||||||||||||||||||||||||||||    
T  23445380 ttgaaaatagcttatgaacatgtcataagt 23445409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 26184704 - 26184745
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcata 286  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  26184704 tttctataagaaaaggtaaaataaagtcaaattattttcata 26184745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 17628552 - 17628596
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    |||||||| || |||||||| |||||||||||| |||||||||||    
T  17628552 tttctatattaaaagataaagtaaagtcaaattgttttcatataa 17628596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 34179987 - 34179927
Alignment:
Q  247 tctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||| | ||||||||||||||||||||| |||| || |||||| ||| ||| ||||||    
T  34179987 tctataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcat 34179927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 37591315 - 37591343
Alignment:
Q  176 tgtttggataaacaacttaattaagctta 204  Q
    |||||||||||||||||||||||||||||    
T  37591315 tgtttggataaacaacttaattaagctta 37591343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 43371989 - 43371957
Alignment:
Q  258 agataaaataaagtcaaattattttcatataag 290  Q
    |||||||||||||| ||||||||||||||||||    
T  43371989 agataaaataaagtaaaattattttcatataag 43371957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 45804230 - 45804274
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataa 289  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||    
T  45804230 tttctataataaataataaaataaagtcaaactattttcatataa 45804274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 45990163 - 45990123
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||||||||| ||||| |||||||||||||| ||||    
T  45990163 aagataaaataaagtaaaattgttttcatataagctataag 45990123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 47498941 - 47498905
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctg 293  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  47498941 aagataaaataaagttaaattattttcgtataagctg 47498905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 14295459 - 14295519
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttc 305  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||||| ||||||| ||||    
T  14295459 tttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 35135779 - 35135727
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||| ||||    
T  35135779 tttctataacaaaagataaaataaagtcaaactattttcatataagctataag 35135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 32969234 - 32969187
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||    
T  32969234 tttctataacaaaagataaaataaagtcaaattatttttatataagct 32969187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 32059694 - 32059644
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||||||| | |||||||||||||| ||||||| ||||||    
T  32059694 aagataaaataaagtcaaactgttttcatataagctataagctgttttcat 32059644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 35960367 - 35960428
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||| ||||||||||||||||||| || |||||||||| || |||| |||||||||    
T  35960367 tttctataataaaagataaaataaagtcaaacta-tttcatataaactataagttgatttcat 35960428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 37063191 - 37063129
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||| ||  ||||| ||||||    
T  37063191 tttctataacaaaagataaaataaagtcaaactattttcatataagttgccagctggtttcat 37063129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 583886 - 583838
Alignment:
Q  249 tataatagaagataaaataaagtcaaattattttcatataagctgtaag 297  Q
    ||||| ||||||||||||||||||||| | |||||||||||||| ||||    
T  583886 tataacagaagataaaataaagtcaaactgttttcatataagctataag 583838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 8158406 - 8158371
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagct 292  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8158406 aagataaaataaagttaaattattttcatataagct 8158371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 36796808 - 36796757
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgc 311  Q
    ||||||||| || |||||||||||| ||||||| ||||||| ||||||||||    
T  36796808 ataaaataaggttaaattattttcacataagctataagctgttttcatttgc 36796757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 288
Target Start/End: Complemental strand, 38047960 - 38047929
Alignment:
Q  257 aagataaaataaagtcaaattattttcatata 288  Q
    ||||||||||||||||||||||||||||||||    
T  38047960 aagataaaataaagtcaaattattttcatata 38047929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 9202853 - 9202803
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||||||||| ||||| |||||||||||||  ||||||| ||||||    
T  9202853 aagataaaataaagttaaattgttttcatataagcaataagctgttttcat 9202803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 12595857 - 12595795
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    ||||||||| | ||||||||||||||| ||||| ||||||||||| || | ||||| ||||||    
T  12595857 tttctataacaaaagataaaataaagttaaattgttttcatataaactatgagctggtttcat 12595795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 12425536 - 12425585
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataagctgtaagctgatttca 306  Q
    ||||||||||||||| ||||| ||||| |||||||| ||||||| |||||    
T  12425536 aagataaaataaagttaaattgttttcgtataagctataagctgttttca 12425585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 366
Target Start/End: Complemental strand, 28586883 - 28586762
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaa 344  Q
    ||||||||| | ||||||||||||||||||| | |||||||||||  | ||||||| ||| |   || ||||||||||| |||  ||||| |  ||||||    
T  28586883 tttctataacaaaagataaaataaagtcaaactgttttcatataaattataagctgttttgacgagctatcctagagagcttatcgaaataagctgaaaa 28586784  T
Q  345 tagcttatgaacatgtcataag 366  Q
     |||||| | | ||||||||||    
T  28586783 cagcttacggatatgtcataag 28586762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Complemental strand, 29117056 - 29117000
Alignment:
Q  235 tatatgttattttctataatagaagataaaataaagtcaaattattttcatataagct 292  Q
    |||||||||||| |||||| | ||||||||||||||||||| | ||||| ||||||||    
T  29117056 tatatgttattt-ctataacaaaagataaaataaagtcaaactgttttcgtataagct 29117000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 36638734 - 36638819
Alignment:
Q  279 ttttcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcata 364  Q
    |||||||||||||   |||||| ||||||  |  ||||||||||| ||| |||||| |  |||||| |||||||||||||||||||    
T  36638734 ttttcatataagcctaaagctgttttcataagttatcctagagagcttatggaaataagctgaaaaaagcttatgaacatgtcata 36638819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 39750108 - 39750141
Alignment:
Q  257 aagataaaataaagtcaaattattttcatataag 290  Q
    ||||||||||||||||||| ||||||||||||||    
T  39750108 aagataaaataaagtcaaactattttcatataag 39750141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Original strand, 10303754 - 10303794
Alignment:
Q  245 tttctataatagaagataaaataaagtcaaattattttcat 285  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  10303754 tttctataacaaaagataaaataaagtcaaattgttttcat 10303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 12975315 - 12975355
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    |||||||||| ||||||| |||||||||||||| |||||||    
T  12975315 ataaaataaaatcaaattgttttcatataagctataagctg 12975355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 17756872 - 17756808
Alignment:
Q  220 tcatataagtgcttatatatgttat-tttctataatagaagataaaataaagtcaaattattttc 283  Q
    |||||||||||||||| ||||   | ||||| ||| ||||||||||||||||||||||| |||||    
T  17756872 tcatataagtgcttatgtatgagttgtttctttaacagaagataaaataaagtcaaattgttttc 17756808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 34205206 - 34205254
Alignment:
Q  259 gataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||| ||||||||||||||||| ||||||||| |||| || ||||||    
T  34205206 gataaagtaaagtcaaattatttttatataagctataagttgttttcat 34205254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 36542362 - 36542278
Alignment:
Q  282 tcatataagctgtaagctgatttcatttgcaatcctagagagtttacggaaattacttgaaaatagcttatgaacatgtcataag 366  Q
    ||||||||||| |||||||||| |||  || ||||||||||| ||  |||||| | || |||| ||||| || ||||||||||||    
T  36542362 tcatataagctataagctgattccataagctatcctagagagcttgtggaaataagttaaaaacagcttctggacatgtcataag 36542278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 34110 - 34072
Alignment:
Q  249 tataatagaagataaaataaagtcaaattattttcatat 287  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34110 tataataaaagataaaataaagtcaaattattttcatat 34072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 291
Target Start/End: Complemental strand, 1259 - 1145
Alignment:
Q  180 tggataaacaacttaattaag--cttacaacatagacacttctcatataagtgctta--tatatgttattttctataatagaagataaaataaagtcaaa 275  Q
    |||||||||||||||||||||  |||| | |||| ||   | |||||||||||||||  |||| | || ||||||||| | |||||||||||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaa 1161  T
Q  276 ttattttcatataagc 291  Q
     |||| ||||||||||    
T  1160 ctattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 291
Target Start/End: Original strand, 2716 - 2830
Alignment:
Q  180 tggataaacaacttaattaag--cttacaacatagacacttctcatataagtgcttatatat--gttattttctataatagaagataaaataaagtcaaa 275  Q
    |||||||||||||||||||||  |||| | |||| ||   | |||||||||||||||| |||  | ||||| |||||| | |||||||||||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctattt-ctataacaaaagataaaataaagtcaaa 2814  T
Q  276 ttattttcatataagc 291  Q
     |||| ||||||||||    
T  2815 ctattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 6600 - 6552
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt 309  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  6600 ataaaataaagtcaaactattttcatataagctataagct-atttcattt 6552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 13620 - 13572
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctgatttcattt 309  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  13620 ataaaataaagtcaaactattttcatataagctataagct-atttcattt 13572  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 300
Target Start/End: Complemental strand, 69045 - 69005
Alignment:
Q  260 ataaaataaagtcaaattattttcatataagctgtaagctg 300  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  69045 ataaaataaagtcaaattattttcatataagcaataagctg 69005  T

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Target: scaffold0549 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 1866 - 1779
Alignment:
Q  221 catataagtgcttatatatgttatt-ttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||||||||||   ||  |||||||| | ||||||||||||||| || ||||||||||||| ||| |||| || ||||||    
T  1866 catataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 1779  T

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Target: scaffold0549; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 3956 - 3869
Alignment:
Q  221 catataagtgcttatatatgttatt-ttctataatagaagataaaataaagtcaaattattttcatataagctgtaagctgatttcat 307  Q
    |||||||||||||||||||   ||  |||||||| | ||||||||||||||| || ||||||||||||| ||| |||| || ||||||    
T  3956 catataagtgcttatatataagataattctataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcat 3869  T

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