View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_1 (Length: 559)
Name: NF12500_low_1
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Complemental strand, 7723194 - 7722749
Alignment:
| Q |
12 |
tgagatgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagtgaattg |
111 |
Q |
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| T |
7723194 |
tgagatgaacgatgcatcattctttgtgaaaaagagtaatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattg |
7723105 |
T |
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| Q |
112 |
ttgtcttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaat |
211 |
Q |
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| T |
7723104 |
ttgtcttgtagtgtttgaagataataaaatgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaat |
7723005 |
T |
|
| Q |
212 |
acaaaatatatatagtaaaggagataaaattatagagcatannnnnnnnnnnnggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtg |
311 |
Q |
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| T |
7723004 |
acaaaatatatatagtaaaggagataaaattataaagcataagagagagag--ggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtg |
7722907 |
T |
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| Q |
312 |
tgtaatgtaagcaagtgtttgagtttctattatatctctgcagaattactactgtttatgacacccttcatgtatgattttgatttcttcttgcataatg |
411 |
Q |
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| T |
7722906 |
tgtaatgtaagcaagtgtttgagtttctattatatctctgcagaattactactgtttatgacacccttcatgtatcattttgatttcttcttgaataatg |
7722807 |
T |
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| Q |
412 |
catagtttcaatttatactagtagaaagatcataaagataaagaaagagaaagagagg |
469 |
Q |
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| T |
7722806 |
catagtttcaatttatactagtagaaagatcataaagataaagaaagagaaagagagg |
7722749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 490 - 541
Target Start/End: Complemental strand, 7722723 - 7722672
Alignment:
| Q |
490 |
atgatgggttggtcaaaagagcccacgtgactagagggaacggtcttcaagg |
541 |
Q |
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| T |
7722723 |
atgatgggttggtcaaaagagcccacgtgactagagggaacggtcttcaagg |
7722672 |
T |
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