View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_10 (Length: 394)
Name: NF12500_low_10
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_10 |
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| [»] chr4 (8 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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| [»] scaffold0305 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 394
Target Start/End: Complemental strand, 7915969 - 7915595
Alignment:
| Q |
20 |
tatgaagatgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915969 |
tatgaagatgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagt |
7915870 |
T |
|
| Q |
120 |
cccaaatggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcatttaggtgaaaaagctccca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915869 |
cccaaatggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcatttaggtgaaaaagctccca |
7915770 |
T |
|
| Q |
220 |
gtggaagttcaattaaagattcaagaattggaaaggtaaggattaggctatcaacacttgaagccaataaaatttacaccaattcttatccacttcttgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915769 |
gtggaagttcaattaaagattcaagaattggaaaggtaaggattaggctatcaacacttgaagccaataaaatttacaccaattcttatccacttcttgt |
7915670 |
T |
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| Q |
320 |
tttacaccaacatggagttaagaaaatgggtgagcttcaactcacagtgaggttcactgcactctcactagctaa |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7915669 |
tttacaccaacatggagttaagaaaatgggtgagcttcaactcacagtgaggttcactgcactctcactagctaa |
7915595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 7833337 - 7833269
Alignment:
| Q |
293 |
ttacaccaattcttatccacttcttgttttacaccaacatggagttaagaaaatgggtgagcttcaact |
361 |
Q |
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| T |
7833337 |
ttacaccaattcttattcacttcttgttttacaccaacagggagtaaagagaataggtgaacttcaact |
7833269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 7906758 - 7906611
Alignment:
| Q |
69 |
aaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatgggaagtttatgatccttgcactg |
168 |
Q |
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||||||||||||||||||||| |||||||| |||||| |||| ||||| ||||||| ||||| ||||||| || ||| ||||| |||||||| ||| |
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| T |
7906758 |
aaatatggtcagaaatggatctaaacaagaaaacttttcgacattttcaaacccaaattaaatgaacaatacaaataggaggtttaatatccttgccctg |
7906659 |
T |
|
| Q |
169 |
tcataaca----ctaggtgtttttgacaattgtcatttaggtgaaaaa |
212 |
Q |
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| T |
7906658 |
tgatgacatcagctgtttgtttttgacaattgccatataggtgaaaaa |
7906611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 7833449 - 7833389
Alignment:
| Q |
27 |
atgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggtcagaaatgga |
87 |
Q |
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|||||||||| ||||||||||| |||||||||| |||| | |||||||||||| |||||| |
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| T |
7833449 |
atgaaggatgttcatggtagcatagatgcataccgtgtacccaaatatggtcaggaatgga |
7833389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 7882775 - 7882718
Alignment:
| Q |
341 |
gaaaatgggtgagctt----caactcacagtgaggttcactgcactctcactagctaa |
394 |
Q |
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|||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| |
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| T |
7882775 |
gaaaatgggtgagcttgattcaactcacactgaggttcacagcactctcactagctaa |
7882718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 21197835 - 21197795
Alignment:
| Q |
126 |
tggaatgagcaatacacatgggaagtttatgatccttgcac |
166 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |
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| T |
21197835 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
21197795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 27253677 - 27253637
Alignment:
| Q |
126 |
tggaatgagcaatacacatgggaagtttatgatccttgcac |
166 |
Q |
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|||||||||||||| || ||||||||||||||||||||||| |
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| T |
27253677 |
tggaatgagcaatatacttgggaagtttatgatccttgcac |
27253637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 11577494 - 11577425
Alignment:
| Q |
125 |
atggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaat |
194 |
Q |
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|||||||||||| || |||||||| ||| ||||||| |||||||| || ||| | |||||||||||||| |
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| T |
11577494 |
atggaatgagcagtatacatgggaggttcatgatccatgcactgtgatcacagttagtgtttttgacaat |
11577425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 8416421 - 8416033
Alignment:
| Q |
21 |
atgaagatgaaggatggtcatggtagcacagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtc |
120 |
Q |
| |
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||||||||||| || | | ||| ||||| ||||| ||||| || || || ||||||||||||||||||||||| ||||| || | |||||||| |||| |
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| T |
8416421 |
atgaagatgaacaatagccgtggaagcaccgatgcgtactgcgtagccaagtatggtcagaaatggatcagaactagaactattcttgacacttttagtc |
8416322 |
T |
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| Q |
121 |
ccaaatggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcatttaggt---------gaaaa |
211 |
Q |
| |
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| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||| |
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| T |
8416321 |
ctaaatggaatgaacaatacacatgggaagtttatgatccttgcactgtaataacactaggagtttttgataattgccatttaggtggtggaggagaaaa |
8416222 |
T |
|
| Q |
212 |
agctccca---gtggaag---ttcaattaaagattcaagaattggaaaggtaaggattaggctatcaacacttgaagccaataaaatttacaccaattct |
305 |
Q |
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|||||| | ||||||| | || || |||||||| || |||||||| ||||||||||| |||||||||||||| |||| ||||||||| || ||| |
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| T |
8416221 |
agctcctagtggtggaagcaatgcagctagggattcaaggatcggaaaggttaggattaggctctcaacacttgaagctaatagaatttacacaaactct |
8416122 |
T |
|
| Q |
306 |
tatccacttcttgttttacaccaacatggagttaagaaaatgggtgagcttcaactcacagtgaggttcactgcactctcactagctaa |
394 |
Q |
| |
|
||||||||||||||||| || ||| |||| || ||||||||||||||||||||||| || | ||||||||| | || ||| ||||||| |
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| T |
8416121 |
tatccacttcttgttttgcatcaaaatggtgtcaagaaaatgggtgagcttcaactagcaataaggttcactactctttcaatagctaa |
8416033 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 3745 - 3586
Alignment:
| Q |
48 |
acagatgcatactgtgttgctaaatatggtcagaaatggatcagaacaagaacacttttagacactttcagtcccaaatggaatgagcaatacacatggg |
147 |
Q |
| |
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|||||||| || ||||| || ||||||||| ||||||| | |||||||||||| | || | ||| | ||| ||||||||||| ||||||||||||| |
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| T |
3745 |
acagatgcttattgtgtagcaaaatatggtatgaaatgggttagaacaagaacaatcactgagagttttaatccaaaatggaatgaacaatacacatggg |
3646 |
T |
|
| Q |
148 |
aagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcatttaggtg |
207 |
Q |
| |
|
||||| ||||||||||||| || ||||| | |||||||||||||||||||||||||||| |
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|
| T |
3645 |
aagttcatgatccttgcacagttataacttttggtgtttttgacaattgtcatttaggtg |
3586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 9528986 - 9529027
Alignment:
| Q |
125 |
atggaatgagcaatacacatgggaagtttatgatccttgcac |
166 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
9528986 |
atggaatgagcaatacacatgggatgtttatgatccttgcac |
9529027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 13708 - 13632
Alignment:
| Q |
126 |
tggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaattgtcattt |
202 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||||||||| ||||| || ||| | ||||| ||||| ||||||||||| |
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|
| T |
13708 |
tggaatgagcaatatacttgggaggtttttgatccttgtactgtgattacaattggtgtatttgataattgtcattt |
13632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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