View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_12 (Length: 371)
Name: NF12500_low_12
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 41711502 - 41711865
Alignment:
| Q |
1 |
tgagatgaagatggaggacatgccgttaccggcgctgtttgaacaagcaaggaagatccacgcaaccgccactgagtccggtgctgaccaagtacgcttt |
100 |
Q |
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| T |
41711502 |
tgagatgaagatggaggacatgccgttaccggcgctgtttgaacaagcaaggaagatccacgcaaccgccactgagtccggtgctgaccaagtacgcttt |
41711601 |
T |
|
| Q |
101 |
cgtttctcttcttcatttgttttcatgtttctgtttcataattgagttgtgtgtaatttgttcaggagcttgtgaaaaagggatgtgaggctctgaataa |
200 |
Q |
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| T |
41711602 |
cgtttctcttcttcatttgttttcatgtttctgtttcataattaagttgtgtgtaatttgttcaggagcttgtgaaaaagggatgtgaggctctgaataa |
41711701 |
T |
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| Q |
201 |
atgcgaaaacatggttaataggcttggtttgttctctgctaatgaaaccaaagaggatatcagcacaaccgatctcaagtacatcctggtacctcttctt |
300 |
Q |
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| T |
41711702 |
atgcgaaaacatggttaataggcttggtttgttctctgctaatgaaaccaaagaggatatcagcacaaccgatctcaagtacatcctggtacctcttctt |
41711801 |
T |
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| Q |
301 |
atgcttcttaataaccatgcttttcgattgattgttgcttgctttactgttgtgatgtccatct |
364 |
Q |
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| T |
41711802 |
atgcttcttaataaccatgcttttcgattgattgttgcttgctttactgttgtgatgttcatct |
41711865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 55017313 - 55017342
Alignment:
| Q |
228 |
tttgttctctgctaatgaaaccaaagagga |
257 |
Q |
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| T |
55017313 |
tttgttctctgctaatgaaaccaaagagga |
55017342 |
T |
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