View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_13 (Length: 363)
Name: NF12500_low_13
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 67 - 348
Target Start/End: Original strand, 38342034 - 38342317
Alignment:
| Q |
67 |
ttagttagttagtactatatatcatagtttacacgcaacagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
166 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342034 |
ttagttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
38342133 |
T |
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| Q |
167 |
gttaaaacactctctaatatcctggatcttctgaaattctgttaatcctatac--atatataaacttaaaccacgctattcacatcacataacaaaactg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38342134 |
gttaaaacactctctaatatcctggatcttctgaaattcagttaatcctatacatatatataaacttaaaccgcgctattcacatcacataacaaaactg |
38342233 |
T |
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| Q |
265 |
aaatagtatctcatcagttttaagggtttagtaaaacaagtaacatcatgccttcatcgtccgatactaataaaaggttgaaga |
348 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342234 |
aaatagtctctcatcagttttaagggtttagtaaaacaagtaacatcatgccttcatcgtccgatactaataaaaggttgaaga |
38342317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 67 - 348
Target Start/End: Original strand, 38446227 - 38446510
Alignment:
| Q |
67 |
ttagttagttagtactatatatcatagtttacacgcaacagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
166 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446227 |
ttagttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatatag |
38446326 |
T |
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| Q |
167 |
gttaaaacactctctaatatcctggatcttctgaaattctgttaatcctatac--atatataaacttaaaccacgctattcacatcacataacaaaactg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38446327 |
gttaaaacactctctaatatcctggatcttctgaaattcagttaatcctatacatatatataaacttaaaccgcgctattcacatcacataacaaaactg |
38446426 |
T |
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| Q |
265 |
aaatagtatctcatcagttttaagggtttagtaaaacaagtaacatcatgccttcatcgtccgatactaataaaaggttgaaga |
348 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446427 |
aaatagtctctcatcagttttaagggtttagtaaaacaagtaacatcatgccttcatcgtccgatactaataaaaggttgaaga |
38446510 |
T |
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