View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_14 (Length: 360)
Name: NF12500_low_14
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_14 |
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| [»] scaffold0393 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 40 - 350
Target Start/End: Complemental strand, 30598786 - 30598458
Alignment:
| Q |
40 |
tgcatattcaacaaacatgatgcattagacattttaaggaataatgtataaagttgataaccgccaatgttgaataacaaaagggctatagtttggatag |
139 |
Q |
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| T |
30598786 |
tgcatattcaacaaacatgatgcattaggcattttaaggaataatgtatgaagttgataaccgccaatgttgagtaacaaaagggctatagtttggatag |
30598687 |
T |
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| Q |
140 |
caacaaagctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagcaa------------------gtttacactgaaaaacacac |
221 |
Q |
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| T |
30598686 |
caacaaagctaattcctcatcagataccttgacttcaatctatgatcctaattatgcagcaaatcttgcagctaattgatgtttacactgaaaaacacac |
30598587 |
T |
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| Q |
222 |
gcacacatacaatgtacatttattgtatacttcagcttagagtgataagaatgcttataattaattgaataagaaaaataaaaacacaacaagaaagtgt |
321 |
Q |
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| T |
30598586 |
gcacacatacaatgcacatttattgtatacttcagcttagagtgataagaatgcttataattaattgaataagaaaaataaaaacacagcaagaaagtgt |
30598487 |
T |
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| Q |
322 |
atggccttacacagagttgttcccctttg |
350 |
Q |
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| T |
30598486 |
atggccttacacagagttgttcccctttg |
30598458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 2410672 - 2410587
Alignment:
| Q |
118 |
aaaagggctatagtttggatagcaacaaagctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagcaagt |
203 |
Q |
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| T |
2410672 |
aaaagggctatattttagatagcaacaaagctaattcttcatcagataccttgacttcgacgtatgatcctaatgatgcagcaagt |
2410587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 2411035 - 2410958
Alignment:
| Q |
40 |
tgcatattcaacaaacatgatgcatta-gacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
116 |
Q |
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| T |
2411035 |
tgcatatgcaacaaacatgatgcattaaggcattttaaggaataacttatgaaggttttaaccgccaatgttgaataa |
2410958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 34899974 - 34899929
Alignment:
| Q |
1 |
tctcaacttgaaagttgaaactcacaaactttacctatatgcatat |
46 |
Q |
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| T |
34899974 |
tctcaacttgaaagttgaaactaccaaactttacctatatgcatat |
34899929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 347
Target Start/End: Complemental strand, 2410565 - 2410417
Alignment:
| Q |
207 |
cactgaaaaa-cacacgcacacatacaatgtacatttattgtatacttcagc-ttagagtga---taagaatgcttataattaattgaataagaa-aaat |
300 |
Q |
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| T |
2410565 |
cactgaaaaaacacacacacgcacacaatgcacattgattgtatacttcagcactagaatgatactaagaatgtttataatgaattgaatatgaagaaaa |
2410466 |
T |
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| Q |
301 |
aaaaacacaacaagaaagtg--tatggccttacacagagttgttcccct |
347 |
Q |
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| T |
2410465 |
taaaagacaacaaggaagtgtatatggtcttacacagagttgctcccct |
2410417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 13056 - 12968
Alignment:
| Q |
112 |
aataacaaaagggctatagtttggatagcaacaaa-gctaattcctcatcagataccttgacttcaatctatgatccaaattatgcagc |
199 |
Q |
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| T |
13056 |
aataataaaagggctatattttagatagcaacaaaagctaattcctcatcagataccttgacttcgacatatgatcctaatgatgcagc |
12968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 13410 - 13341
Alignment:
| Q |
48 |
caacaaacatgatgcatta-gacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
116 |
Q |
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| T |
13410 |
caacaaacatgatgcattaaggcattttaaagaataatgtatgaagttgttaaccgccaatgttgaataa |
13341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 12877 - 12794
Alignment:
| Q |
267 |
taagaatgcttataattaattgaataagaaaaata-aaaacacaacaagaaagtgtat--ggccttacacagagttgttcccct |
347 |
Q |
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| T |
12877 |
taagaatgtttataatgaattgaatatgaagaaaataaaagacaacaaggaagtgtatatggtcttacacagagttgctcccct |
12794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 39960091 - 39960160
Alignment:
| Q |
48 |
caacaaacatgatgcatta-gacattttaaggaataatgtataaagttgataaccgccaatgttgaataa |
116 |
Q |
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| T |
39960091 |
caacaaacatgatgcaataaggcatttgaatgaataatgtataaagttgttaactgccaatgttaaataa |
39960160 |
T |
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