View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12500_low_15 (Length: 343)

Name: NF12500_low_15
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12500_low_15
NF12500_low_15
[»] chr2 (5 HSPs)
chr2 (11-232)||(44909737-44909973)
chr2 (72-148)||(14106064-14106140)
chr2 (71-146)||(43822042-43822117)
chr2 (249-321)||(44910171-44910243)
chr2 (249-316)||(44916342-44916409)
[»] chr6 (7 HSPs)
chr6 (68-146)||(24977771-24977849)
chr6 (68-146)||(24976340-24976418)
chr6 (73-146)||(12770773-12770846)
chr6 (73-144)||(12766760-12766831)
chr6 (71-144)||(3894855-3894928)
chr6 (71-146)||(12800105-12800180)
chr6 (73-127)||(12777047-12777101)
[»] chr3 (7 HSPs)
chr3 (68-144)||(16724876-16724952)
chr3 (73-148)||(24835069-24835144)
chr3 (71-144)||(18177746-18177819)
chr3 (73-146)||(20204893-20204966)
chr3 (73-150)||(22261736-22261813)
chr3 (73-150)||(22266686-22266763)
chr3 (77-144)||(35269852-35269919)
[»] chr1 (5 HSPs)
chr1 (71-147)||(9826454-9826530)
chr1 (71-146)||(31279278-31279353)
chr1 (71-144)||(4449635-4449708)
chr1 (72-147)||(9812058-9812133)
chr1 (71-147)||(9751435-9751510)
[»] chr5 (1 HSPs)
chr5 (71-146)||(40235003-40235078)
[»] chr4 (2 HSPs)
chr4 (71-146)||(39936153-39936228)
chr4 (72-145)||(28745642-28745715)
[»] scaffold0432 (1 HSPs)
scaffold0432 (71-147)||(5820-5896)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 44909737 - 44909973
Alignment:
Q  11 agcagagacaagaggaaagcgtttaggtatttgtaatatttatttggatacagaaataacaaatcagagtggcgcagcggaagcgtggtgggcccataac 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44909737 agcagagacaagaggaaagcgtttaggtatttgtaatatttatttggatacaaaaataacaaatcagagtggcgcagcggaagcgtggtgggcccataac 44909836  T
Q  111 ccacaggtccctggatcgaaaccaggctctgataaattctttctt---------------ttccttatatattttgggtctgttattggcattttactgc 195  Q
    ||||||||||||||||||||||||||||||||||||||||| |||               || |||||||||||||||||||||| ||||||||||||||    
T  44909837 ccacaggtccctggatcgaaaccaggctctgataaattcttcctttttctttctaccatctttcttatatattttgggtctgttactggcattttactgc 44909936  T
Q  196 ataatcagcttcgtttttagcatttcgcatgatattt 232  Q
    |||||||||||||||||||||||||||||||||||||    
T  44909937 ataatcagcttcgtttttagcatttcgcatgatattt 44909973  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 14106140 - 14106064
Alignment:
Q  72 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14106140 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 14106064  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 43822042 - 43822117
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43822042 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 43822117  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 44910171 - 44910243
Alignment:
Q  249 ttgatggaattatgctgcataccatgagataaagttttggctcatttcaatttgtatacaattttcaggaatc 321  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44910171 ttgatggaattatcctgcataccatgagataaagttttggctcatttcaatttgtatacaattttcaggaatc 44910243  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 44916342 - 44916409
Alignment:
Q  249 ttgatggaattatgctgcataccatgagataaagttttggctcatttcaatttgtatacaattttcag 316  Q
    |||||| | |||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||    
T  44916342 ttgatgaatttatgctgcataccatgagataaaattctagctcatttcaatttgtatacaactttcag 44916409  T

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Target: chr6 (Bit Score: 79; Significance: 7e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 24977849 - 24977771
Alignment:
Q  68 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24977849 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 24977771  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 24976418 - 24976340
Alignment:
Q  68 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24976418 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataaa 24976340  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 12770846 - 12770773
Alignment:
Q  73 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12770846 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggattgaaaccaggctctgataaa 12770773  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 12766831 - 12766760
Alignment:
Q  73 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 144  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12766831 atcagagtggcgcagcggaagcatggtgggcccataacccataggtccctggatcgaaaccaggctctgata 12766760  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 3894928 - 3894855
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  3894928 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccttggatagaaaccagactctgata 3894855  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 12800180 - 12800105
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  12800180 aaatcagagtggtgcggcggaagcgtggtgggcccataacctacaggtccctggatcgaaaccaggctctaataaa 12800105  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 12777101 - 12777047
Alignment:
Q  73 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12777101 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatc 12777047  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 16724952 - 16724876
Alignment:
Q  68 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16724952 aacaaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 16724876  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 24835144 - 24835069
Alignment:
Q  73 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835144 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaatt 24835069  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 18177819 - 18177746
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18177819 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 18177746  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 20204893 - 20204966
Alignment:
Q  73 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20204893 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 20204966  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 22261736 - 22261813
Alignment:
Q  73 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaattct 150  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22261736 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataagttct 22261813  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 22266763 - 22266686
Alignment:
Q  73 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaattct 150  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22266763 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctttgataagttct 22266686  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 35269919 - 35269852
Alignment:
Q  77 gagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 144  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35269919 gagtggcacagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 35269852  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 9826530 - 9826454
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9826530 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 9826454  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 31279353 - 31279278
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279353 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 31279278  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 4449708 - 4449635
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4449708 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgata 4449635  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 9812133 - 9812058
Alignment:
Q  72 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 147  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||    
T  9812133 aatcagagtggcgcagcggaagcgtggtgggcccataacccataggtccctggattaaaaccaggctctgataaat 9812058  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 9751510 - 9751435
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 147  Q
    |||| |||||||||||| |||||||||||||| | ||||| ||||| |||||||||||||| ||| |||| ||||||    
T  9751510 aaattagagtggcgcag-ggaagcgtggtgggtctataactcacagatccctggatcgaaatcagactctaataaat 9751435  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 40235078 - 40235003
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40235078 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 40235003  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 39936153 - 39936228
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39936153 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaa 39936228  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 28745715 - 28745642
Alignment:
Q  72 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28745715 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataa 28745642  T

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Target: scaffold0432 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 5896 - 5820
Alignment:
Q  71 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggtccctggatcgaaaccaggctctgataaat 147  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||| ||||||    
T  5896 aaatcagagtgacgcagcggaagcgtggtgggtccataacccataggttcctggatcgaaactaggctctaataaat 5820  T

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