View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_16 (Length: 329)
Name: NF12500_low_16
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 40243633 - 40243822
Alignment:
| Q |
18 |
ctatgctttctcatgtgtcctcctaatgcttgacccaaagagaatcccataccacaaatagaacactcatgcatttttggtttgttccacaaactaagag |
117 |
Q |
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| T |
40243633 |
ctatgttttctcatgtgtcctcctaatgcttgacccaaagagaatcccataccacaaatagaacactcatgcatttttggtttgttccacaaactaagag |
40243732 |
T |
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| Q |
118 |
attttgcttgttctttgagttcttcaccttcagctagtttcattctcttgtggctagccctatggccaccaagggcttgaaaagatgaga |
207 |
Q |
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| T |
40243733 |
attttgcttgttctttgagttcttcaccttcagctagtttcattctcttgtggctagccctatggccaccaagggcttgaaaagatgaga |
40243822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 40243879 - 40243934
Alignment:
| Q |
264 |
ggacaagatagtagcatcaaacaatttgcataatctatgccttcattgctcctttg |
319 |
Q |
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| T |
40243879 |
ggacaagatagtagcatcaaacaatttgcataatctatgccttcattgctcctttg |
40243934 |
T |
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