View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_17 (Length: 320)
Name: NF12500_low_17
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 7057167 - 7057476
Alignment:
| Q |
1 |
ggcatttaagaaaatgcaagatgttcaggatggtgtgaaagattatgatatggctagtcctcattcatcaccattgagcttcccctttgctaagattatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7057167 |
ggcatttaagaaaatgcaagatgttcaggatggtgtgaaagattatgatatggctagtcctcattcatcaccattgagcttcccttttgctaagattatg |
7057266 |
T |
|
| Q |
101 |
cctgaaccgcaacatacaataattagcagcttgaagagtaccaattcttatatcaatgttggagcctcaccaaagagaaactcacactctaatgtcgata |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7057267 |
cctgaaccgcaacatacaataattggcagcttgaagagtaccaattcttatatcaatgttggagcctcaccaaagagaaactcacactctaatgtcgata |
7057366 |
T |
|
| Q |
201 |
tcaggccatcggagattataccaaaaactgttccaccagaaatttcattagctaataatttttctttgccacctcctgcggcccagagtgtatccaagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7057367 |
tcaggccatcggagattataccaaaaactgttccaccagaaatttcattagctaataatttttctttgccacctcctgcggcccagagtgtatccaagga |
7057466 |
T |
|
| Q |
301 |
cgagtctctg |
310 |
Q |
| |
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|||||||||| |
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|
| T |
7057467 |
cgagtctctg |
7057476 |
T |
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