View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12500_low_18 (Length: 318)

Name: NF12500_low_18
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12500_low_18
NF12500_low_18
[»] chr4 (1 HSPs)
chr4 (9-304)||(29292761-29293048)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 29293048 - 29292761
Alignment:
Q  9 agcataggaagccatggatgaaaatagctcaaataatacagctataggtatttacttctttgaaatttatactttaatgttttctagcatttgtttcttt 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  29293048 agcagaggaagccatggatgaaaatagctcaaataatacagctataggtatttactt---tgaaatttatactttaatgttttctagcatttgtttcttt 29292952  T
Q  109 ttaagaaatacttattagtcacaaatatttgttaagagtttcttaaagcttaaaaatgaatttataagtgagagacatcattcactttataaagaatttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29292951 ttaagaaatacttattagtcacaaatatttgttaagagtttcttaaagcttaaaaatgaatttataagtgagagacatcattcactttataaagaatttt 29292852  T
Q  209 cgtagggacaaattaaccgcaatttaaaatgtaagatgatatcaaaacgtgtaaaacattcattaggccattcatctctacctccaaatattaagt 304  Q
    |||||||||||||||||||||||||||| ||||||     |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29292851 cgtagggacaaattaaccgcaatttaaattgtaag-----atcaaaacgtgtaaaatattcattaggccatttatctctacctccaaatattaagt 29292761  T

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