View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_2 (Length: 551)
Name: NF12500_low_2
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 52475825 - 52475283
Alignment:
| Q |
1 |
gtggatgagaatcaggaggttcttaatgagctcaaggtcaatgaattttttatagtattatggtttatgtttacatagtttctttcgacacgtatt---- |
96 |
Q |
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| T |
52475825 |
gtggatgagaatcaggaggttcttaatgagctcaaggtcaatgaattttttatagtattatggtttgtgtttacatagtttctttcgaaacgtattattg |
52475726 |
T |
|
| Q |
97 |
-----taataaaa-tattgtgatttgctgattaaatagaaggagcaacttgagattgagaaaaaaggccgtggaggtgtgtatcttacattaaaggatct |
190 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475725 |
gtatttaataaaaatattgtgatttgctgattaaatagaaggagcaacttcagattgagaaaaaaggccgtggaggtgtgtatcttacattaaaggatct |
52475626 |
T |
|
| Q |
191 |
ttctgagatgcaatatgcttccaaggtgtgtgtgtattaatagtacttctatgcaatgaaagtgttagctgcgtttcatcaaatttacttgcttggatga |
290 |
Q |
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| T |
52475625 |
ttctgagatgcaatatgcttccaaggtgtgtgtgtattaatagtacttctatgcaatgaaagtgttagctgcgtttcatcaaatttacttgcttggataa |
52475526 |
T |
|
| Q |
291 |
cttgtttctattaaattccaatgaaaaaggttgtaaaagaggcgttaaggatggcatctgtagtgcaatggtttcccagagtagcacttcaagactgtga |
390 |
Q |
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| T |
52475525 |
cttgtttctattaaattcccatg-aaaaggttgtaaaagaggcgttaaggatggcatctgtagtgcaatggtttcccagagtagcacttcaagactgtga |
52475427 |
T |
|
| Q |
391 |
aattgaaggtttacataataactgtatacagatttaatatagaaggnnnnnnntaaataaactcagtagtataattacttaatggctatttatataggat |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475426 |
aattgaaggtttacataataactgtatacagatttaatatagaaggaaaaaaataaataaactcagtagtataattacttaatggctatttatataggat |
52475327 |
T |
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| Q |
491 |
ttaatatcaagaaaggttggaacatcaatattgatgctagatct |
534 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52475326 |
ttaatatcaagaaaggttggaacatcaatattgatgctagatct |
52475283 |
T |
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