View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_21 (Length: 290)
Name: NF12500_low_21
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 64 - 260
Target Start/End: Complemental strand, 6716308 - 6716112
Alignment:
| Q |
64 |
tttccccgttttgattttagtttttgcataatgatatatattgatctaaatgaacaatgattaacttttattgaacgcaaacatagaggaaagccaataa |
163 |
Q |
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| T |
6716308 |
tttccccattttgattttagtttttgcataatgatatatattggtctaaatgaacaatgattaacttttattgaacgcaaacatagaggaaagccaataa |
6716209 |
T |
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| Q |
164 |
aaattgaaactttaaatcacaaactacaaattttccacannnnnnnnnnnnnnnnngcataatcatatatgagtgtaattaaatgaacaatgattaa |
260 |
Q |
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| T |
6716208 |
aaattgaaactttaaatcacaaactacaaattttccacattttgttttttgtttttgcataatcatatatgagtgtaattaaatgaacaatgattaa |
6716112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 6716425 - 6716304
Alignment:
| Q |
78 |
ttttagtttttgcataatgatatatattgatctaaatgaacaatgattaacttttattgaacgcaaacatagaggaaagccaa-taaaaattgaaacttt |
176 |
Q |
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| T |
6716425 |
tttttgtttctgtataatgatatatttgaatgtaaatgaacaatgattaactttcattgaaatc-aacacagagtaaaaccaacaaaaaattgaaacttt |
6716327 |
T |
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| Q |
177 |
aaatcacaaactacaaattttcc |
199 |
Q |
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| T |
6716326 |
gaatcacaaactaaaaaatttcc |
6716304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 42230727 - 42230851
Alignment:
| Q |
77 |
attttagtttttgcataatgatatatattgatctaaatgaacaatgattaacttttattgaacgca----aacatagaggaaagccaat-aaaaattgaa |
171 |
Q |
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| T |
42230727 |
atttttgtttttgcataatggtatatatgggtgtaaatgaaaaatgattaactttcattgaactcaacacaacgtagaggaaagtcaataaaaaattgaa |
42230826 |
T |
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| Q |
172 |
actttaaatcacaaactacaaattt |
196 |
Q |
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| T |
42230827 |
actttgaaccacaaactacaaattt |
42230851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 198
Target Start/End: Original strand, 42230081 - 42230200
Alignment:
| Q |
84 |
tttttgcataatgatatatattgatctaaatgaacaatgattaacttttattgaacgcaa----acatagaggaaagccaataaaa-attgaaactttaa |
178 |
Q |
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||||||| |||||||||||| | |||||||| ||||||||||||| |||||| ||| ||| | |||||| |||| |||| ||||||||||| | |
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| T |
42230081 |
tttttgcggaatgatatatatgagtgtaaatgaataatgattaactttcattgaagtcaacacaacacataggaaaaccaacaaaaaattgaaactttga |
42230180 |
T |
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| Q |
179 |
atcacaaactacaaattttc |
198 |
Q |
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| T |
42230181 |
atcacaaaatacaaattttc |
42230200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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