View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_22 (Length: 250)
Name: NF12500_low_22
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 52602367 - 52602132
Alignment:
| Q |
1 |
acggcctgtcagcagaacctaatgcctatattaacggatgcaacgttctcctatttggatgtcggttatcagaccagagtaattcactaaattaatcacc |
100 |
Q |
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| T |
52602367 |
acggcctgtcagcagaacctaatgcctatattaacggatgcaacgttctcctatttggatgtcggttatcagaccagagtaattcactaaattaatcacc |
52602268 |
T |
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| Q |
101 |
agattcaaaacagtgtttcaaaacaatctgatagttgcataaacagaacaaatggagaaggcaagtaattcattcttgtcacctgattcacctatattag |
200 |
Q |
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| T |
52602267 |
agattcaaaacagtgtttcaaaacaatctgatagttgcataaacagaacaaatggagaaggcaagtaattcattcttgtcacctgattcacctatattag |
52602168 |
T |
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| Q |
201 |
tataaatagaattgtgatttctaaaacaaacaccag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52602167 |
tataaatagaattgtgatttctaaaacaaacaccag |
52602132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 52623118 - 52622883
Alignment:
| Q |
1 |
acggcctgtcagcagaacctaatgcctatattaacggatgcaacgttctcctatttggatgtcggttatcagaccagagtaattcactaaattaatcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52623118 |
acggcctgtcagcagaacctaatgcctatattaacggatgcaacgttctcctatttggatgtcggttatcagaccagagtaattcactaaattaatcacc |
52623019 |
T |
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| Q |
101 |
agattcaaaacagtgtttcaaaacaatctgatagttgcataaacagaacaaatggagaaggcaagtaattcattcttgtcacctgattcacctatattag |
200 |
Q |
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| T |
52623018 |
agattcaaaacagtgtttcaaaacaatctgatagttgcataaacagaacaaatggagaaggcaagtaattcattcttgtcacctgattcacctatattag |
52622919 |
T |
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| Q |
201 |
tataaatagaattgtgatttctaaaacaaacaccag |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52622918 |
tataaatagaattgtgatttctaaaacaaacaccag |
52622883 |
T |
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