View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_24 (Length: 247)
Name: NF12500_low_24
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 43077091 - 43076873
Alignment:
| Q |
18 |
aaagagtgcaaccaccacaaaggaaagaaacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaa |
117 |
Q |
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| T |
43077091 |
aaagagtgcaaccaccacaaaggaaagaaacacaaacgcttcagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaa |
43076992 |
T |
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| Q |
118 |
tcatttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttcaatgccacagttccaaatttcttaacctcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43076991 |
tcatttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttcaacgccacagttccaaatttcttaacctcaaa |
43076892 |
T |
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| Q |
218 |
tttccaagtcacaggttct |
236 |
Q |
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|||||||||||||| |||| |
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| T |
43076891 |
tttccaagtcacagtttct |
43076873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 43091279 - 43091062
Alignment:
| Q |
18 |
aaagagtgcaaccaccacaaaggaaagaaacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaacaatcctaa |
117 |
Q |
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||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43091279 |
aaagagtgcaatcaccacaaaggaaacaaacacaaacgcttcagaaaaatcttctagg-aatcataatcttcctcttcatcgtcctagtaacaatcctaa |
43091181 |
T |
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| Q |
118 |
tcatttgggctgtcttaaaaccttctaaaccttctttcattctccaagatgtcactgtttacgctttcaatgccacagttccaaatttcttaacctcaaa |
217 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
43091180 |
tcatttgggatgtcttaaaaccttctaaaccgtctttcattctccaagatgtcactgtttacgctttcaacgccacagttcaaaatttcttaacctcaaa |
43091081 |
T |
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| Q |
218 |
tttccaagtcacaggttct |
236 |
Q |
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|||||||||||||| |||| |
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| T |
43091080 |
tttccaagtcacagtttct |
43091062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 43092194 - 43092104
Alignment:
| Q |
18 |
aaagagtgcaaccaccacaaaggaaagaaacacaaacgctttagaaaaatcttctggggaatcataatcttcctcttcattgtcctagtaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||||| |||||||||| |
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| T |
43092194 |
aaagagtgcaaccaccacaaaggaaagaaacacaaacgcttcataaaactcttctggcgaatcataatcttcctcttcatcgtcctagtaa |
43092104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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