View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_26 (Length: 242)
Name: NF12500_low_26
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_26 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 39956309 - 39956534
Alignment:
| Q |
20 |
tagtacacaaattaaaacaaacttaagcgtaacacactctgctatattccagtaaattcttctccgtaaaccaaaccactctaaactctccaaacccctt |
119 |
Q |
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| T |
39956309 |
tagtacacaaattaaaacaaacttaagcgtaacagactctgctatattccagtaaattcttctccgtaaaccaaaccactctaaactctcgaaacccctt |
39956408 |
T |
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| Q |
120 |
tactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactcaacacaaccacactcttc |
219 |
Q |
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| T |
39956409 |
tactataaatagacacagcatgtcaacctagtagtcacgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactcaacacaaccacacttttc |
39956508 |
T |
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| Q |
220 |
ac---tcatcttcatcgtaacatggc |
242 |
Q |
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| T |
39956509 |
actcatcatcttcatcgtaacatggc |
39956534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 39940766 - 39940853
Alignment:
| Q |
156 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactc-aacacaaccacactcttcactcatcttcatcgtaacatggc |
242 |
Q |
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| T |
39940766 |
acgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgatacaaccacactcttcactcatcttcatcgtaacatggc |
39940853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 39940661 - 39940732
Alignment:
| Q |
34 |
aaacaaacttaagc-gtaacacactctgctatattccagtaaattcttctccgtaaaccaaaccactctaaactctc |
109 |
Q |
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| T |
39940661 |
aaacaaacctaagctgttacacactctgctatattccagcaaatccttctccat-----aaaccactctaaactctc |
39940732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 28742382 - 28742314
Alignment:
| Q |
24 |
acacaaattaaaacaaacttaagcgtaacacactctgctatattccagtaaattcttctccgtaaacca |
92 |
Q |
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||||| ||| |||| ||| |||| |||| ||||||||||||||||||| |||| |||||| ||||||| |
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| T |
28742382 |
acacagatttaaactaacgtaagagtaagacactctgctatattccagcaaatccttctctataaacca |
28742314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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