View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12500_low_28 (Length: 221)
Name: NF12500_low_28
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 114; Significance: 6e-58; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 10290323 - 10290210
Alignment:
| Q |
2 |
tccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaatt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290323 |
tccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaatt |
10290224 |
T |
|
| Q |
102 |
cgttcatatttatt |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10290223 |
cgttcatatttatt |
10290210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 10290155 - 10290056
Alignment:
| Q |
122 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10290155 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
10290056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9747057 - 9747171
Alignment:
| Q |
1 |
gtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataagaat |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| || || ||||||| |||||| |
|
|
| T |
9747057 |
gtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaagaat |
9747156 |
T |
|
| Q |
101 |
tcgttcatatttatt |
115 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
9747157 |
tcgttcatacttatt |
9747171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10298724 - 10298669
Alignment:
| Q |
1 |
gtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10298724 |
gtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
10298669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
| Q |
57 |
ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10298525 |
ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt |
10298467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 9747370 - 9747454
Alignment:
| Q |
134 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
221 |
Q |
| |
|
|||||| |||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9747370 |
ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaact |
9747454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 10298270 - 10298177
Alignment:
| Q |
125 |
tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
221 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |||||| ||| | |||||||||| |||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
10298270 |
tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaact |
10298177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 37743885 - 37743971
Alignment:
| Q |
134 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37743885 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact |
37743971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 34694519 - 34694433
Alignment:
| Q |
134 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34694519 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact |
34694433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Complemental strand, 34716931 - 34716845
Alignment:
| Q |
134 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||| | ||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34716931 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact |
34716845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University