View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_3 (Length: 550)
Name: NF12500_low_3
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 35744411 - 35744757
Alignment:
| Q |
11 |
ggagcacagatctaggtgttagaggagatgagcagctactatctgaaaatgaagaggttctcgctacgaattttccaaatgaacttgactttggactgaa |
110 |
Q |
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| T |
35744411 |
ggagcacagatctaggtgttagaggagatgagcagctactatctgaaaatgaagaggttctcgctacgaattttccaaatgaacttgactttggactgaa |
35744510 |
T |
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| Q |
111 |
ttctttcttttgttcatcttcttctatgtcaaatctctcacttgctaacttcatcaaataatctagagtcaccagcaaagtttcacctgcacaacaaatc |
210 |
Q |
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| T |
35744511 |
ttctttcttttgttcatcttcttctatgtcaaatctctcacttgctaacttcatcaaataatctagagtcaccagcaaagtttcacctgcacaacaaatc |
35744610 |
T |
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| Q |
211 |
aaattgcttgaaaactgacaaactagtattttaacccatgcaacgcaggaggagataattattgcatttttaacgagtatgcacttttatgcaggcctcg |
310 |
Q |
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| T |
35744611 |
aaattgcttgaaaactgacaaactagtattttaaccaatgcaacgcaggaggagataattattgcatttttaacgagtatgcacttttatgcaggcctcg |
35744710 |
T |
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| Q |
311 |
aatccaatcacattttacattgatgtcacttttgttatatcactttc |
357 |
Q |
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| T |
35744711 |
aatccaatcacattttacattgatgtcacttttgttatatcactttc |
35744757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 401 - 550
Target Start/End: Original strand, 35744796 - 35744941
Alignment:
| Q |
401 |
aagaagtttttacattgttgatgcatatctaagatcattagtaacatacccaattgacgcatgttgttgtcatccttgcatgttggaaatgcaatatcaa |
500 |
Q |
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| T |
35744796 |
aagaagtttttacattgttgatgcata----agatcattaataacatacccaattgacgcatgttgttgtcatccttgcatgttggaaatgcaatatcaa |
35744891 |
T |
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| Q |
501 |
gcttatccatgcaatcattgtccatcatccatgactctccaagagacttc |
550 |
Q |
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| T |
35744892 |
gcttatccatgcaatcattgtccatcatccatgactctccaagagacttc |
35744941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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