View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_30 (Length: 214)
Name: NF12500_low_30
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 327656 - 327504
Alignment:
| Q |
18 |
aaaggagcaacaaaacaattaagaaacttatatgcaaccttgaatctagcaaaacacaagtttatggagtaaacataaccaagtacaatttaaaagaaga |
117 |
Q |
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| T |
327656 |
aaaggagcaacaaaacaactaagaaacttatatgcaaccttgaatctagcaaaacacaagtttagggagtaaacataaccaagtacagtttaaaagaaga |
327557 |
T |
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| Q |
118 |
ctgtaatacacttttaagaaaatataatattgtaaagccaacaaaatacagtt |
170 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
327556 |
ctgaaatacacttttaagaaaatataatattgtaaagccaacaaaatacagtt |
327504 |
T |
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