View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12500_low_6 (Length: 452)
Name: NF12500_low_6
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 442
Target Start/End: Complemental strand, 3678621 - 3678188
Alignment:
| Q |
14 |
cagtttcataggtctacaaaa-ttagaaagccttacacattaatattcaatgtgttgatatcctaatatgcctacattcacaagggttatacactgtttt |
112 |
Q |
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| T |
3678621 |
cagtttcataggtctacaaaagttagaaagctttacacattaatattcaatgtgttgatatcccaatatgcctacattcacaagggctatacactgtttt |
3678522 |
T |
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| Q |
113 |
atttaaaagttaatttttgttaaagatacaaagttaattatattatgaaaccaaatgaaaatataagctaggaaccaaattgaaaaaattacgaatctca |
212 |
Q |
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| T |
3678521 |
atttaaaagttaatttttgttaaagatataaagttaattatattatgaaaccaaatgaaaatataagctaggaaccaaattgaaaaaattacgaatctca |
3678422 |
T |
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| Q |
213 |
catgaataatccaataagccaatgatacaaatcttgagacaccaagagcaaatacataatatcctgtaaatgtttcaaccatctg----nnnnnnngaag |
308 |
Q |
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| T |
3678421 |
catgaataatccaataagccaatgatacaaatcttgagacaccaagagcaaatacataatatcctgtaaatgtttcaaccatctgaaaaaaaaaaagaag |
3678322 |
T |
|
| Q |
309 |
ttaaatttacaatatactctataaggcataagattatagtaaaacaaattaaattgagaggctgcaaacctttgcattttgcatataacgaagttgagga |
408 |
Q |
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| T |
3678321 |
ttaaatttacaatatactctataaggcataagattatagtaaaacaaattaaattgagaggctgcaaacctttgcattttgcatataacgaagttgagga |
3678222 |
T |
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| Q |
409 |
agtattgaaatagcttccacgtatacagtgaacg |
442 |
Q |
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| T |
3678221 |
agtattgaaatagcttccacatatacggtgaacg |
3678188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 3663091 - 3662999
Alignment:
| Q |
205 |
gaatctcacatgaataatccaataagccaatgatacaaatcttgagacaccaagagcaaatacataatatcctgtaaatgtttcaaccatctg |
297 |
Q |
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| T |
3663091 |
gaatcttacatgaataatccaaaaagccaatgagagaaatcttgagacaccaagagcaaatacataatatcctgtgaatgtttcaacgatctg |
3662999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 3685966 - 3685874
Alignment:
| Q |
205 |
gaatctcacatgaataatccaataagccaatgatacaaatcttgagacaccaagagcaaatacataatatcctgtaaatgtttcaaccatctg |
297 |
Q |
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| T |
3685966 |
gaatctcacatgaataatccaataagccagtgaaaaaaatcttgaaacaccaagagcaaatacataataacctgtgaatgtttcaaccatctg |
3685874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 209 - 297
Target Start/End: Complemental strand, 3669410 - 3669322
Alignment:
| Q |
209 |
ctcacatgaataatccaataagccaatgatacaaatcttgagacaccaagagcaaatacataatatcctgtaaatgtttcaaccatctg |
297 |
Q |
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| T |
3669410 |
ctcacatgaataatccaaaatgcaagtgtgaagaatcttgaaacaccaagagcaaatacataatatcctgtgaatgtttcaaccatctg |
3669322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 3662916 - 3662865
Alignment:
| Q |
376 |
acctttgcattttgcatataacgaagttgaggaagtattgaaatagcttcca |
427 |
Q |
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| T |
3662916 |
acctttgcattttgcatataacgaagttggggaagaattgaaatagtttcca |
3662865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 427
Target Start/End: Complemental strand, 3685782 - 3685729
Alignment:
| Q |
374 |
aaacctttgcattttgcatataacgaagttgaggaagtattgaaatagcttcca |
427 |
Q |
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| T |
3685782 |
aaacctttgcattttgcatataacgaatttgaggaagtactgaaacagtttcca |
3685729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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