View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12500_low_7 (Length: 441)
Name: NF12500_low_7
Description: NF12500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12500_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 46551826 - 46552253
Alignment:
| Q |
19 |
atggacatggctctagaatacccgtaaaattaaaaacttatgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46551826 |
atggacatggctctagaatacccgtaaaattaaaaacttatgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaag |
46551925 |
T |
|
| Q |
119 |
atgctgtatgtttgtttgactttccttttaaagtcatttgagagataattacataatgagtaaattgtcattttggc---------------actatcac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46551926 |
atgctgtatgtttgtttgactttccttttaaagtcattttagagataattacataatgagtaaattgtcattttggcccttgaatgtgagtcactatcac |
46552025 |
T |
|
| Q |
204 |
tatatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttcttgcattttatatcctacccctctttttatttgaaat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46552026 |
tatatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttcttgcattttatatcctacccctctttttatttgaaat |
46552125 |
T |
|
| Q |
304 |
tttcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattttgaaatcaatcataaacccacacaatggcctgataat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46552126 |
tttcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattttgaaatcaatcataagcccacacaatggcctgataat |
46552225 |
T |
|
| Q |
404 |
gctggcaaacatctatctttcacctatg |
431 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46552226 |
gctggcaaacatctatctttcacctatg |
46552253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 206 - 431
Target Start/End: Original strand, 1028581 - 1028806
Alignment:
| Q |
206 |
tatcaaaattacaaaacatgcctatattacttacataattgaattcaatgttcgctatttcttgcattttatatcctacccctctttttatttgaaattt |
305 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1028581 |
tatcaaaattacaaaacatgcctaaattacgtacataattgaattcaatgttcgctatttcttgcattttatatcctacccttctttttatttgaaattt |
1028680 |
T |
|
| Q |
306 |
tcactttgggattatatgatttaatgagttgataaataaaattcttgagttggtagcattttgaaatcaatcataaacccacacaatggcctgataatgc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
1028681 |
tcactttgggattatatgatttaatgagttaataaataaaatgcttgagttggtagcattgtgaaatcaatcctaaacccacacaatggcctgatagtgc |
1028780 |
T |
|
| Q |
406 |
tggcaaacatctatctttcacctatg |
431 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1028781 |
tggcaaacatctatctttcacctatg |
1028806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 1028366 - 1028542
Alignment:
| Q |
19 |
atggacatggctctagaatacccgtaaaattaaaaacttatgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaag |
118 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028366 |
atggacatggctctagaatacccatacaattaaaaacttttgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaag |
1028465 |
T |
|
| Q |
119 |
atgctgtatgtttgtttgactttccttttaaagtcatttgagagataattacataatgagtaaattgtcattttggc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1028466 |
atgctgtatgtttgtttgactttccttttaaagtcattttagagataattacataacgagtaaattgtcattttggc |
1028542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 40830995 - 40831168
Alignment:
| Q |
19 |
atggacatggctctagaatacccgtaaaattaaaaacttatgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaag |
118 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||| ||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
40830995 |
atggacatggctctagaatgcctgtaaaattaagaacttttgtggaattgactatggatgtagcttcagcttcccctcggcggtatttcttcgaggcaag |
40831094 |
T |
|
| Q |
119 |
atgctgtatgtttgtttgactttcctttta--aagtcatttgagagataattacataatgagtaaattgtcattttgg |
194 |
Q |
| |
|
|||||||| ||||| |||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40831095 |
atgctgta----tgtttaactttccttttattctggcattttagagataattacataatgagtaaattatcattttgg |
40831168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University