View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12501_high_13 (Length: 275)
Name: NF12501_high_13
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 264492 - 264742
Alignment:
| Q |
1 |
agtcagtagtgctttctatttctagatctgatcttgtagttaatttaattcactcttatgtttttggttttggatctcgtaaattgttatagttattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
264492 |
agtcagtagtgctttctatttctagatctgatcttgtagttaatttaattcactcttatgtttttggttttggatctcgtaaattgttatagttattttg |
264591 |
T |
|
| Q |
101 |
tttataccttgcattagttatgatttttagtagttaggttatgttaatcttgattttgccatgtgaaattgactgttttgattatatataatcttaattc |
200 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
264592 |
tttatatcttgcattagtta---------gtagttaggttatgttaatcttgattttgccatgtgaaattgactgttttgattatatataatcttaattc |
264682 |
T |
|
| Q |
201 |
ttcatagcttaattaatcttatatatttgattacatgtttcgaaattgcagtcttgctgc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
264683 |
ttcatagcttaattaatcttatatatttgattacatgtttcgaaattgcagtcttgctgc |
264742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University