View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_high_14 (Length: 241)
Name: NF12501_high_14
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 4673881 - 4673760
Alignment:
| Q |
120 |
cgattttatatatatactaactaaccattcctttaatttctcttgagtcatcaaagcatgtcttcatatataggtgtctttctgtataataggttggcat |
219 |
Q |
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| T |
4673881 |
cgattttatatatatactaactaaccattcctttaatttctcttgagtcatcaaagcatgtcttcgtatataggtgtctttctgtataataggttggcat |
4673782 |
T |
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| Q |
220 |
atttttagcaaactattttgac |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
4673781 |
atttttagcaaactattttgac |
4673760 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 21144662 - 21144605
Alignment:
| Q |
121 |
gattttatatatatactaactaaccattcctttaatttctcttgagtcatcaaagcat |
178 |
Q |
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|||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
21144662 |
gattttatatatataccaacaaaccattcctttaatctctcttgagtcatcaaagcat |
21144605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 21144991 - 21145049
Alignment:
| Q |
120 |
cgattttatatatatactaactaaccattcctttaatttctcttgagtcatcaaagcat |
178 |
Q |
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||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||| |
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| T |
21144991 |
cgattttatatatatactaacaaaccattcttataatctctcttgagtcatcaaagcat |
21145049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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