View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12501_high_8 (Length: 337)

Name: NF12501_high_8
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12501_high_8
NF12501_high_8
[»] chr1 (2 HSPs)
chr1 (9-320)||(5160668-5160981)
chr1 (171-320)||(5157366-5157515)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 5160981 - 5160668
Alignment:
Q  9 ttcactgcttcttgtatttttccaaattcaattagtcttaacaaattcattgcctataacctcaacccatctgccactgcatccacnnnnnnnnnn--gc 106  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  5160981 ttcactacttcttgtatttttccaaattcaattagtcgtaacaaattcattgcctataacctcaacccatctgccactgcatccacaaaaaaaaaaaagc 5160882  T
Q  107 acgacatatatgatgacagagtcaatttaatggcagcatgaattaagaattgcagaaaataaattggcgtctcgaatcaccaaaccttcagagttggttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5160881 acgacatatatgatgacagagtcaatttaatggcagcatgaattaagaattgcagaaaataaattggtgtctcgaatcaccaaaccttcagagttggttc 5160782  T
Q  207 accgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160781 accgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatca 5160682  T
Q  307 acaaatacaagtta 320  Q
    ||||||||||||||    
T  5160681 acaaatacaagtta 5160668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 5157515 - 5157366
Alignment:
Q  171 tggcgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcct 270  Q
    |||| ||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  5157515 tggcatcttgaatcaccaaacctttagagttggttcgccgtgatttgcgtttgcagcttgctttgccattcctttttgatgtgcacgtgcagctcgtcct 5157416  T
Q  271 gctgcagatttctcaaactcctcttgcctgcaatcaacaaatacaagtta 320  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  5157415 gctgcagatttctcaaagtcctcttgtctgcaatcaacacatacaagtta 5157366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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