View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12501_low_1 (Length: 684)

Name: NF12501_low_1
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12501_low_1
NF12501_low_1
[»] chr5 (3 HSPs)
chr5 (1-668)||(5399858-5400529)
chr5 (80-113)||(38749571-38749604)
chr5 (73-117)||(14818307-14818351)
[»] scaffold0004 (1 HSPs)
scaffold0004 (77-114)||(101015-101052)
[»] chr6 (3 HSPs)
chr6 (80-113)||(17168912-17168945)
chr6 (62-103)||(13815057-13815098)
chr6 (82-122)||(9617454-9617494)
[»] chr7 (2 HSPs)
chr7 (82-122)||(19930940-19930980)
chr7 (80-116)||(30606069-30606105)
[»] chr4 (3 HSPs)
chr4 (73-117)||(32915610-32915654)
chr4 (73-117)||(5555136-5555180)
chr4 (77-117)||(25390890-25390930)
[»] chr8 (2 HSPs)
chr8 (73-120)||(14692470-14692517)
chr8 (77-117)||(18964192-18964232)
[»] chr3 (2 HSPs)
chr3 (63-115)||(41319316-41319369)
chr3 (77-117)||(35222953-35222993)
[»] scaffold0123 (1 HSPs)
scaffold0123 (82-122)||(44524-44564)


Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Original strand, 5399858 - 5400529
Alignment:
Q  1 ctatatatataccatcaatcacagattcggatacggacacaagacacgacatatatatgtctgacatcaatgataatttaaaaaatgacataattcaatg 100  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5399858 ctatatatataccatcaatcacaaactcggatacggacacaagacacgacatatatatgtctgacatcaataataatttaaaaaatgacataattcaatg 5399957  T
Q  101 taactatatgtgtcggtatcgt----atatatgtatatgatactgagacacatataatccgaagagtacgtgtgtttattaggtatatggacatgtctat 196  Q
    ||| ||||||| || |||||||    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||    
T  5399958 taattatatgtttcagtatcgtgtatatatatatatatgatactgagacacatctaatctgaagagtacgtgtgtttattaggtatatggacatgtcgat 5400057  T
Q  197 taatgatcaatcaatacagtagtactactagaactcaattactacgacaataaagaaagtgtatgggttattgcacgtattttgatgggattaaaggaat 296  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5400058 taatgatcaatcaatacagtagtactactagaactcaattacaacgacaataaagaaagtgtatgggttattgcacgtattttgatgggattaaaggaat 5400157  T
Q  297 gttacactttgttgggattttaaaagttgaactttaaaacactttttcagatgaaacagagcgttactcagagtgaaaaggctttgcaaaatttacatgt 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5400158 gttacactttgttgggattttaaaagttgaactttaaaacactttttcagatgaaacagagcgttactcagagtgaaaaggctttgcaaaatttacatgt 5400257  T
Q  397 ggtcattggacaattactagtgtgttgtttgtttctttcatgttctaaaaaagatatgaaaatgtttttggatttttatgattttcattatccatgccat 496  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5400258 ggtcattggacaattactagtgtgttgtttgtttctttcattttctaaaaaagatatgaaaatgtttttggatttttatgattttcattatccatgccat 5400357  T
Q  497 catgattgacatacaatgtaagtaaagtttattgtcctctcataatcgtggcagttttgatcgcataattgctactgatgagtaattctctaaaacatgg 596  Q
    ||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5400358 catgattgatataaaatgtaagtaaaatttattgtcctctcataatcgtggcagttttgatcgcataattgctactgatgagtaattctctaaaacatgg 5400457  T
Q  597 aatctaagaacaaatatttatcccttttgccaatgggaaacatggaatctaaaataatactaggataggatt 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5400458 aatctaagaacaaatatttatcccttttgccaatgggaaacatggaatctaaaataatactaggataggatt 5400529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 38749604 - 38749571
Alignment:
Q  80 aaaaaatgacataattcaatgtaactatatgtgt 113  Q
    |||||||||||||||||||||||| |||||||||    
T  38749604 aaaaaatgacataattcaatgtaattatatgtgt 38749571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 14818351 - 14818307
Alignment:
Q  73 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 117  Q
    ||||||| | |||||||||||||||||||||  ||||||||||||    
T  14818351 ataatttgagaaatgacataattcaatgtaaacatatgtgtcggt 14818307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 101015 - 101052
Alignment:
Q  77 tttaaaaaatgacataattcaatgtaactatatgtgtc 114  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  101015 tttaaaaaatgacataattcaatgtaattatatgtgtc 101052  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 17168912 - 17168945
Alignment:
Q  80 aaaaaatgacataattcaatgtaactatatgtgt 113  Q
    ||||||||||||||||||||||||||||||||||    
T  17168912 aaaaaatgacataattcaatgtaactatatgtgt 17168945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 13815098 - 13815057
Alignment:
Q  62 tgacatcaatgataatttaaaaaatgacataattcaatgtaa 103  Q
    ||||| |||| ||||||||||||||||||||||| |||||||    
T  13815098 tgacaccaataataatttaaaaaatgacataattgaatgtaa 13815057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 9617454 - 9617494
Alignment:
Q  82 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 122  Q
    ||||| |||||||||||||||| ||||||||||||| ||||    
T  9617454 aaaatcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 19930980 - 19930940
Alignment:
Q  82 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 122  Q
    |||||||||||||||||||||| ||||||||||| ||||||    
T  19930980 aaaatgacataattcaatgtaattatatgtgtcgatatcgt 19930940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 30606105 - 30606069
Alignment:
Q  80 aaaaaatgacataattcaatgtaactatatgtgtcgg 116  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30606105 aaaaaatgacataattcaatgtaaccatatgtgtcgg 30606069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 32915654 - 32915610
Alignment:
Q  73 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 117  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||    
T  32915654 ataatttaaaaaatcacataattcaatgtaattatatgtttcggt 32915610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 5555180 - 5555136
Alignment:
Q  73 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggt 117  Q
    |||||||||||||| | |||||| ||||||| |||||||||||||    
T  5555180 ataatttaaaaaataagataatttaatgtaattatatgtgtcggt 5555136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 25390930 - 25390890
Alignment:
Q  77 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 117  Q
    |||| |||||||||||||||||| |||| ||||||||||||    
T  25390930 tttagaaaatgacataattcaatataaccatatgtgtcggt 25390890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 14692470 - 14692517
Alignment:
Q  73 ataatttaaaaaatgacataattcaatgtaactatatgtgtcggtatc 120  Q
    ||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  14692470 ataatttgagaaatgacataattcagtgtaactataggtgtcggtatc 14692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 18964192 - 18964232
Alignment:
Q  77 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 117  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  18964192 tttagaaaatcacataattcaatgtaattatatgtgtcggt 18964232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 41319369 - 41319316
Alignment:
Q  63 gacatcaatgataattt-aaaaaatgacataattcaatgtaactatatgtgtcg 115  Q
    |||| |||| ||||||| |||||||||||||||||||||||| | |||||||||    
T  41319369 gacaccaataataatttgaaaaaatgacataattcaatgtaattgtatgtgtcg 41319316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 35222953 - 35222993
Alignment:
Q  77 tttaaaaaatgacataattcaatgtaactatatgtgtcggt 117  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  35222953 tttagaaaatcacataattcaatgtaattatatgtgtcggt 35222993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 44564 - 44524
Alignment:
Q  82 aaaatgacataattcaatgtaactatatgtgtcggtatcgt 122  Q
    ||||| |||||||||| ||||| ||||||||||||||||||    
T  44564 aaaatcacataattcagtgtaattatatgtgtcggtatcgt 44524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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