View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12501_low_12 (Length: 365)
Name: NF12501_low_12
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 8338498 - 8338175
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338498 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
8338399 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
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|||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338398 |
tcaattataacaaaagatatgtctgatacgtaagagaagccttcgtagtcgtggccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
8338299 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8338298 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaagattttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
8338199 |
T |
|
| Q |
318 |
taggatgtttgagaatgaggtgtt |
341 |
Q |
| |
|
||||||| |||||||||||||||| |
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|
| T |
8338198 |
taggatggttgagaatgaggtgtt |
8338175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 36100614 - 36100290
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
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||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
36100614 |
ctttgaaatggtataataaatcttaccaagtgttgcaccagcttcaacccatgttgtttcatcttgtaaattgacttcaactgaattgaggtgaagcaag |
36100515 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
|
|||||||||||| ||| || |||||| ||| ||||||||||| || ||||| ||||||||||| ||||||| || | |||||| |||||||||||| |
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|
| T |
36100514 |
tcaattataacataaggcacgtctgataagtatgagaagccttcataatcgtggccgccacttcggattcttaattggaagttgttgattttggcacatt |
36100415 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||||||| |||| |||||||| |||| ||||| |||||||||||||||||||||||| || |
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|
| T |
36100414 |
taattgttgtttggacatgagaatcatcttttggagttataattgctaaagcttttggtgatgttgctgttttaaatctcttgttatgtattttcatatt |
36100315 |
T |
|
| Q |
318 |
taggatgtttgagaatgaggtgttt |
342 |
Q |
| |
|
||||||| |||||||||||| |||| |
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|
| T |
36100314 |
taggatggttgagaatgaggggttt |
36100290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 19 - 337
Target Start/End: Complemental strand, 36107872 - 36107554
Alignment:
| Q |
19 |
tttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggt |
118 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||| |||| || || |
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|
| T |
36107872 |
tttgcaatgttataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgatatcaactgaattgagatgaaacatgt |
36107773 |
T |
|
| Q |
119 |
caattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacattt |
218 |
Q |
| |
|
||| ||||| | ||| ||||||||| | || || || ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
36107772 |
caagtataataaaaggcacatctgatacatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaatctgaatgttgttgcttttggcacattt |
36107673 |
T |
|
| Q |
219 |
aattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgttt |
318 |
Q |
| |
|
||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||| |
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|
| T |
36107672 |
aattgtttcttggatatgcgaatcatcttttgcagttataattgccaaaggttttggtgttgttgctgttttaaatctcttattttgtattttcatgttg |
36107573 |
T |
|
| Q |
319 |
aggatgtttgagaatgagg |
337 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
36107572 |
aggatagttgagaatgagg |
36107554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 21482605 - 21482290
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
|
|||| ||||||||||||||| ||| || | ||||||||| |||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| | |
|
|
| T |
21482605 |
ctttccaatggtataataaagctttccaagtgttgcacctgattcaacccatgctgtttcttcttgtaaattgacatcaactgaattgagatgaagcaag |
21482506 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
|
|||||||||||| ||| || |||||| | || ||||| ||||| ||||||| ||||||||||| ||||| |||||||| ||||| |||||| |||| |
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|
| T |
21482505 |
tcaattataacaaaaggcacgtctgatacatatgagaaaccttcaaagtcgtggccgccacttcggattctgatctgaattttgttacttttgaggcatt |
21482406 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |
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|
| T |
21482405 |
gaattgttgcttggacatgagaatcatcttttgcagttataattgccaaaggttttggtgttg---ttgttttaaatctcttgttttgtattttcatgtt |
21482309 |
T |
|
| Q |
318 |
taggatgtttgagaatgag |
336 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
21482308 |
gaggatggttgagaatgag |
21482290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 34971777 - 34972056
Alignment:
| Q |
23 |
caatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtcaat |
122 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
34971777 |
caattgtataataaatcttaccaagtgttgcacctgattcaacccatgttgttgattcttgtaaattgacatcaactgaattgaggtgaaacatgtcaag |
34971876 |
T |
|
| Q |
123 |
tataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatttaatt |
222 |
Q |
| |
|
|| || | ||| ||||||||| || || || ||||| ||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
34971877 |
tacaataaaaggcacatctgataaatatgataaaccttcatagtcatgccctccacttcgaattcttatctgaatgttgttacttttggcacatttaatt |
34971976 |
T |
|
| Q |
223 |
gttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgtt |
302 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||| || |||| ||||||| |
|
|
| T |
34971977 |
gttgcttggacatgagaaacatcttttgcagttataattgccaaaggctttggggttgttgttgctttaaatatcttgtt |
34972056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 36090464 - 36090786
Alignment:
| Q |
20 |
ttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcaggtc |
119 |
Q |
| |
|
||||||| ||||||||||||||||| | | ||||||| |||||||||||||||||||| |||| |||||||| ||||| ||||||||| ||||||| ||| |
|
|
| T |
36090464 |
ttgcaatcgtataataaatcttaccaagtattgcacctgattcaacccatgcagtttcttcttctaaattgacatcaattgaattgagatgaagcaagtc |
36090563 |
T |
|
| Q |
120 |
aattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacattta |
219 |
Q |
| |
|
|||||||||| ||| | |||||| | | || || |||||||| || || ||||||||||||||||| |||||||| ||||| ||||| ||||||||| |
|
|
| T |
36090564 |
aattataacataaggcatgtctgatacatttgataaaccttcgtaatcatgtccgccacttcgaattctgatctgaatgttgttacttttagcacattta |
36090663 |
T |
|
| Q |
220 |
attgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtg-ttgtttttgtttcaaatctcttgttatgtattttcatgttt |
318 |
Q |
| |
|
| |||| |||||||||| ||| ||| ||| | ||||||||||||||||||||| ||| ||||| ||||| |||||||||| ||||||||||||||| |
|
|
| T |
36090664 |
actgttacttggacatgggaactatcctttactgttataattgccaaaggttttagtgtttgttgctgttttgaatctcttgtaatgtattttcatgttg |
36090763 |
T |
|
| Q |
319 |
aggatgtttgagaatgaggtgtt |
341 |
Q |
| |
|
| |||| || ||||||||||||| |
|
|
| T |
36090764 |
aagatggttaagaatgaggtgtt |
36090786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 6838634 - 6838311
Alignment:
| Q |
18 |
ctttgcaatggtataataaatcttaccgattgttgcaccagattcaacccatgcagtttcatcttgtaaattgagatcaactgaattgaggtgaagcagg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||||| |||||| |||||||| |||| || | |
|
|
| T |
6838634 |
ctttgcaatggtataataaatcttaccaagtgttgcacctgattcaacccatgctgttgattcttgtaaattgacatcaacagaattgagatgaaacatg |
6838535 |
T |
|
| Q |
118 |
tcaattataacagaagatacatctgatccgtaagagaagccttcgtagtcgtgaccgccacttcgaattcttatctgaatattgttgcttttggcacatt |
217 |
Q |
| |
|
|||| ||||||| ||| ||||||||| | || || | ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6838534 |
tcaagtataacaaaaggcacatctgatacatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaatgttgttgcttttggcacatt |
6838435 |
T |
|
| Q |
218 |
taattgttgcttggacatgagaagcatcttttgcagttataattgccaaaggttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtt |
317 |
Q |
| |
|
||| |||| |||||||||||||| |||||||| ||||||||||||||||||| || ||||||||| ||||| ||||||||| || |||||||| ||||| |
|
|
| T |
6838434 |
taactgtttcttggacatgagaatcatcttttacagttataattgccaaaggcttcggtgttgttgctgttttaaatctcttattttgtatttttatgtt |
6838335 |
T |
|
| Q |
318 |
taggatgtttgagaatgaggtgtt |
341 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
6838334 |
gaggatagttgagaatgaggtgtt |
6838311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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