View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12501_low_13 (Length: 344)
Name: NF12501_low_13
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 23027162 - 23027302
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23027162 |
cacaagctaaaatgatgtatattaaaaacaccgacaataacaccccgcacaaggcgtgcaaaaggtgaaattccggaaaatatttacaagtacaaagtgc |
23027261 |
T |
|
| Q |
290 |
ccaaacacatgcaccaccctaccacataacacaaaaattca |
330 |
Q |
| |
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||||||| ||||||||||||||||| |||||||||||||| |
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| T |
23027262 |
tcaaacacttgcaccaccctaccacaaaacacaaaaattca |
23027302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 10213685 - 10213801
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
|||||||||||||||| |||| ||| ||| ||||| |||||||||| ||||| ||| |||| ||||||| | |||||||||||||||||||||||||| |
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| T |
10213685 |
cacaagctaaaatgatatatactaataacgccggctataacaccctacacaaaccgttcaaagagtggaatactggaaaatatttacaagtacaaagtgc |
10213784 |
T |
|
| Q |
290 |
ccaaacacatgcaccac |
306 |
Q |
| |
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||||| ||| ||||||| |
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|
| T |
10213785 |
ccaaatacaagcaccac |
10213801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 48777545 - 48777685
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |
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| T |
48777545 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccccacacaaggcgtgcaaaaggtgaaatttcggaagatatttacaagtacaaagtgc |
48777644 |
T |
|
| Q |
290 |
ccaaacacatgcaccaccctaccacataacacaaaaattca |
330 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
48777645 |
tcaaacacatgcaccaccgaaccacataacacaaaaattca |
48777685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 12699522 - 12699377
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||| ||||||||||||||||| |||| |
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|
| T |
12699522 |
cacaaactaaaatgatgtatattaaaaacaccggctataacaccccgcacaaggcgtgcaaaaagtagaatttcggtaaatatttacaagtacagagtgt |
12699423 |
T |
|
| Q |
290 |
ccaaacacatgcaccaccctaccacataacacaaaaattcagtgaa |
335 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||| |
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|
| T |
12699422 |
ccaaacacatgcaccaccctaccacaacacacaaaaattcaatgaa |
12699377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 16974298 - 16974438
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| ||| |
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|
| T |
16974298 |
cacaagctaaaatgatatatattaataacaccggctataacaccccgcacaaggcgtgcaaaaagtggaatttcgaaaaatatttacaagtacaaaatgc |
16974397 |
T |
|
| Q |
290 |
ccaaacacatgcaccaccctaccacataacacaaaaattca |
330 |
Q |
| |
|
||||||||| |||||||||||||||| | ||||| |||||| |
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|
| T |
16974398 |
ccaaacacaggcaccaccctaccacaaatcacaataattca |
16974438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 190 - 315
Target Start/End: Original strand, 46562010 - 46562135
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| |||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
46562010 |
cacaagctaaaatgatatatattaataacgccggctataacaccatgcacaaggcgaacaaagagtggaataccggaaaatatttacaagtacaaagtgc |
46562109 |
T |
|
| Q |
290 |
ccaaacacatgcaccaccctaccaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
46562110 |
ccaaacacatgcaccaccctaccaca |
46562135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 194 - 315
Target Start/End: Complemental strand, 356583 - 356462
Alignment:
| Q |
194 |
agctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgcccaa |
293 |
Q |
| |
|
|||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
356583 |
agctaaaatgatatatattaataacgtcggctataacaccctgcacaaggcgtgcaaagagtggaataccggaaaatatttacaagtacaaagtgcccaa |
356484 |
T |
|
| Q |
294 |
acacatgcaccaccctaccaca |
315 |
Q |
| |
|
||| | |||||||||||||||| |
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|
| T |
356483 |
acataggcaccaccctaccaca |
356462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 330
Target Start/End: Complemental strand, 8009235 - 8009096
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||| ||||| |||||||||||||| ||||| | ||||| | |||||||| | ||| ||||||||||| | |
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|
| T |
8009235 |
cacaagctaaaatgagatatattaataacgccgacaata-caccctgcacaaggtgtgcacagagtggattaccggaaaaaaattataagtacaaagtac |
8009137 |
T |
|
| Q |
290 |
ccaaacacatgcaccaccctaccacataacacaaaaattca |
330 |
Q |
| |
|
| |||||| ||||||||||||| | |||| || |||||| |
|
|
| T |
8009136 |
ctgaacacaaacaccaccctaccaaaaaacaaaataattca |
8009096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 25408895 - 25409017
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccggaaaatatttacaagtacaaagtgc |
289 |
Q |
| |
|
|||||| |||||||| |||||||| ||| ||| ||||| |||||||||||||||||||||| ||||| | ||| |||| | ||| ||| ||||||||| |
|
|
| T |
25408895 |
cacaaggtaaaatgagatatattaataacgccgacaata-caccctgcacaaggcgtgcaaagagtggattaccgaaaaaaaattataagaacaaagtgc |
25408993 |
T |
|
| Q |
290 |
ccaaacacatgcaccaccctacca |
313 |
Q |
| |
|
| |||||| ||||||||||||| |
|
|
| T |
25408994 |
ctgaacacaaacaccaccctacca |
25409017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 10459610 - 10459734
Alignment:
| Q |
190 |
cacaagctaaaatgatgtatattaaaaacaccggcaataacaccctgcacaaggcgtgcaaaaggtggaattccgg--aaaatatttacaagtacaaagt |
287 |
Q |
| |
|
||||||||||||||| |||||||| ||| || ||||| |||||||||||||||||||||| ||||| | | || |||| | ||| ||||||||||| |
|
|
| T |
10459610 |
cacaagctaaaatgagatatattaataacgtcgacaata-caccctgcacaaggcgtgcaaagagtggattactggaaaaaaaaattataagtacaaagt |
10459708 |
T |
|
| Q |
288 |
gcccaaacacatgcaccaccctacca |
313 |
Q |
| |
|
||| |||||| ||||||||||||| |
|
|
| T |
10459709 |
gcctgaacacaaacaccaccctacca |
10459734 |
T |
|
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