View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12501_low_14 (Length: 337)

Name: NF12501_low_14
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12501_low_14
NF12501_low_14
[»] chr1 (2 HSPs)
chr1 (9-320)||(5160668-5160981)
chr1 (171-320)||(5157366-5157515)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 5160981 - 5160668
Alignment:
Q  9 ttcactgcttcttgtatttttccaaattcaattagtcttaacaaattcattgcctataacctcaacccatctgccactgcatccacnnnnnnnnnn--gc 106  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||            ||    
T  5160981 ttcactacttcttgtatttttccaaattcaattagtcgtaacaaattcattgcctataacctcaacccatctgccactgcatccacaaaaaaaaaaaagc 5160882  T
Q  107 acgacatatatgatgacagagtcaatttaatggcagcatgaattaagaattgcagaaaataaattggcgtctcgaatcaccaaaccttcagagttggttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5160881 acgacatatatgatgacagagtcaatttaatggcagcatgaattaagaattgcagaaaataaattggtgtctcgaatcaccaaaccttcagagttggttc 5160782  T
Q  207 accgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5160781 accgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcctgctgcagatttctcaaactcctcttgcctgcaatca 5160682  T
Q  307 acaaatacaagtta 320  Q
    ||||||||||||||    
T  5160681 acaaatacaagtta 5160668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 171 - 320
Target Start/End: Complemental strand, 5157515 - 5157366
Alignment:
Q  171 tggcgtctcgaatcaccaaaccttcagagttggttcaccgttatttgagtttgcagcttgctttgccattccttttttatgtgcacgtacagctcatcct 270  Q
    |||| ||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  5157515 tggcatcttgaatcaccaaacctttagagttggttcgccgtgatttgcgtttgcagcttgctttgccattcctttttgatgtgcacgtgcagctcgtcct 5157416  T
Q  271 gctgcagatttctcaaactcctcttgcctgcaatcaacaaatacaagtta 320  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  5157415 gctgcagatttctcaaagtcctcttgtctgcaatcaacacatacaagtta 5157366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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