View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_15 (Length: 335)
Name: NF12501_low_15
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 4499529 - 4499837
Alignment:
| Q |
16 |
attttttcatcaattgagagcagtttcaacaatagatttgaaataaaagagnnnnnnnnnnnnnnnngtaagaattgaaaagcttacaacaatgggagaa |
115 |
Q |
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| T |
4499529 |
attttttcatcaatttagagcagtttcaacaatagatttgaaataaaagagaaaaaaaaaataaaa-gtaagaattgaaaagcttacaacaatgggagaa |
4499627 |
T |
|
| Q |
116 |
acattcaatcgtttgatagagtaagattgacatcatcaagaagacactacatttttaatttccaacagagtactaacggtgttaaatgaaaagggatata |
215 |
Q |
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| T |
4499628 |
acattcaatcgtttgatagagtaagattgacatcatcaagaagacactacatttttaatttctaacagagtactaacggtgttaaatgaaaagggatata |
4499727 |
T |
|
| Q |
216 |
atatatattttaaaagaccttaggggaggttaatgtttattataaaattaaaggggtctggtttttctgtgattgtgtgatgttacgcgtctattatggt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4499728 |
atatatattttaaaagaccttaggggaggttaatgtttattataaaattaaaggggtctggtttttctgtgattgtgtgatgttacgcgtctattatggt |
4499827 |
T |
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| Q |
316 |
tgtattcatc |
325 |
Q |
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|||||||||| |
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| T |
4499828 |
tgtattcatc |
4499837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 13233539 - 13233425
Alignment:
| Q |
83 |
gtaagaattgaaaagcttacaacaatgggagaaacattcaatcgtttgatagagtaagattgacatcatcaagaagacactacatttttaatttccaaca |
182 |
Q |
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| T |
13233539 |
gtaagaattggaaagcttgcaataatggcagaaatactcaatcgtttggtagagaaagattgccatgatcaacaagacaatac-tttttaatttctaaca |
13233441 |
T |
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| Q |
183 |
gagtactaacggtgtt |
198 |
Q |
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| T |
13233440 |
gagtactaacagtgtt |
13233425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 13233593 - 13233555
Alignment:
| Q |
18 |
tttttcatcaattgagagcagtttcaacaatagatttga |
56 |
Q |
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| T |
13233593 |
tttttcatcaattgaaaacagtttcaacaatagatttga |
13233555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 41805249 - 41805206
Alignment:
| Q |
219 |
tatattttaaaagaccttaggggaggttaatgtttattataaaa |
262 |
Q |
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| T |
41805249 |
tatattttaaaagatcttaggggaggtttatgtctattataaaa |
41805206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 39673807 - 39673766
Alignment:
| Q |
221 |
tattttaaaagaccttaggggaggttaatgtttattataaaa |
262 |
Q |
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|||||||||||| |||||||||||||||| | |||||||||| |
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| T |
39673807 |
tattttaaaagaacttaggggaggttaatatctattataaaa |
39673766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 39673884 - 39673843
Alignment:
| Q |
224 |
tttaaaagaccttaggggaggttaatgtttattataaaatta |
265 |
Q |
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||||||||| |||||||||||||||| | ||||||||||||| |
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| T |
39673884 |
tttaaaagaacttaggggaggttaatatctattataaaatta |
39673843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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