View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_16 (Length: 334)
Name: NF12501_low_16
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 6134429 - 6134743
Alignment:
| Q |
1 |
atttgatgaaaatggacgttgagctacatataagtgagatgatattgtatatccaatatcttaaatttttggataaagatgtagcaatgaaaccactttt |
100 |
Q |
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| T |
6134429 |
atttgatgaaaatggatgttgagctacatataagtgagatgatattgtatattcaatatcttaaatttttggataaagatgtagtaatgaaaccacttgt |
6134528 |
T |
|
| Q |
101 |
gtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgatgatttgattacaatgtatgtgaaagcaaaag |
200 |
Q |
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| T |
6134529 |
gtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgatgatttgattacaatgtatgtgaaagcaaaag |
6134628 |
T |
|
| Q |
201 |
ctttctctatttgagagttagcatactcaaatgaatggatgaacccacaccgaagattattggcatgtcaagtaagttataagttttacactggattgaa |
300 |
Q |
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| T |
6134629 |
ctttctctatttgagagttagcatactcaaatgaatggatgaacccacaccgaagattattggcatgtcaagtgagttataagttttacactagattgaa |
6134728 |
T |
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| Q |
301 |
attagatgttgatat |
315 |
Q |
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| T |
6134729 |
agtagatgttgatat |
6134743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 6121515 - 6121837
Alignment:
| Q |
1 |
atttgatgaaaatggacgttgagctacatataagtgagatgatattgtatatccaatatcttaaatttt-tggataaagatgtagcaatgaaaccacttt |
99 |
Q |
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|||| ||||||||||| ||||||| ||||| ||| ||| ||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
6121515 |
atttcatgaaaatggatgttgagcaacatacaagcaagaagatgttgtatatccaatatcttaaattttttggataaagatttattgatgaaaccacttg |
6121614 |
T |
|
| Q |
100 |
tgtggttgtttaaattctaatatgttgatccagactcccttcatgatccaatggttatattagagtcgatgatttgattacaatgtatgtgaaagcaaaa |
199 |
Q |
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| T |
6121615 |
tgtggttgtttacattctaatatggtgatcagaactcccctcataatccaatggttgtattagattcgataatttgattaaagtgtatgcgaatacaaaa |
6121714 |
T |
|
| Q |
200 |
gc------tttctctatttgagagttagcatactcaaatgaatggatgaacccacaccgaagattattggcatgtcaagtaagttataagttttacactg |
293 |
Q |
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|| ||| ||| ||||| | ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6121715 |
gctataagtttttctgtttgacggggagcatactcaaatgaatagatgaactcacatcgaagattattggcatgtcaagtgagttataagttttacactg |
6121814 |
T |
|
| Q |
294 |
gattg-aaattagatgttgatat |
315 |
Q |
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||||| ||| ||||||||||||| |
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| T |
6121815 |
gattgaaaagtagatgttgatat |
6121837 |
T |
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