View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12501_low_17 (Length: 295)

Name: NF12501_low_17
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12501_low_17
NF12501_low_17
[»] chr8 (5 HSPs)
chr8 (1-200)||(19856140-19856339)
chr8 (1-200)||(19850104-19850303)
chr8 (1-200)||(36248036-36248234)
chr8 (188-220)||(6031612-6031644)
chr8 (188-220)||(18434090-18434122)
[»] chr7 (2 HSPs)
chr7 (1-200)||(38411974-38412173)
chr7 (188-220)||(4850543-4850575)
[»] chr1 (3 HSPs)
chr1 (188-288)||(13463916-13464016)
chr1 (1-107)||(13464121-13464227)
chr1 (188-220)||(22839094-22839126)
[»] scaffold1120 (1 HSPs)
scaffold1120 (1-153)||(668-820)
[»] chr6 (2 HSPs)
chr6 (205-275)||(19170087-19170158)
chr6 (188-220)||(18964477-18964509)
[»] scaffold1855 (1 HSPs)
scaffold1855 (188-220)||(460-492)
[»] scaffold0362 (1 HSPs)
scaffold0362 (188-220)||(3645-3677)
[»] scaffold0077 (1 HSPs)
scaffold0077 (188-220)||(767-799)
[»] chr5 (1 HSPs)
chr5 (188-220)||(25676712-25676744)
[»] chr3 (1 HSPs)
chr3 (188-220)||(15578355-15578387)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 5e-90; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 19856339 - 19856140
Alignment:
Q  1 gatgctaaacaaaaatatgaaaacgataaaagaggttagagataatgcaatagactttaaaacaatagaaggtaggggtgcggtaatggaaatggtaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  19856339 gatgctaaacaaaaatatgaaaacgataaaagaggttagaaataatgcaatagactttaaaacaatagaaggtaagggtgcagtaatggaaatagtaggt 19856240  T
Q  101 gcaaacagcaaacagctaagaattccaacaacaaaagaaaagggccaagagaggatccattgggctaaggggtggaccggttttgatctggttcggttca 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  19856239 gcaaacagcaaacagctaagaattccagcaacaaaagaaaagggccaagagaggatccattgggctaaggggtgaaccagttttggtctggttcggttca 19856140  T

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Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 19850303 - 19850104
Alignment:
Q  1 gatgctaaacaaaaatatgaaaacgataaaagaggttagagataatgcaatagactttaaaacaatagaaggtaggggtgcggtaatggaaatggtaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  19850303 gatgctaaacaaaaatatgaaaacgataaaagaggttagaaataatgcaatagactttaaaacaatagaaggtaagggtgcagtaatggaaatagtaggt 19850204  T
Q  101 gcaaacagcaaacagctaagaattccaacaacaaaagaaaagggccaagagaggatccattgggctaaggggtggaccggttttgatctggttcggttca 200  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  19850203 gcaaacagcaaacagctaagaattccagtaacaaaagaaaagggccaagagaggatccattgggctaaggggtgaaccagttttggtctggttcggttca 19850104  T

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Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 36248234 - 36248036
Alignment:
Q  1 gatgctaaacaaaaatatgaaaacgataaaagaggttagagataatgcaatagactttaaaacaatagaaggtaggggtgcggtaatggaaatggtaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||    
T  36248234 gatgctaaacaaaaatatgaaaacgataaaagaggttagaaataatacaatagactttaaaacaacagaaggtaggg-tgcagtaatggaaatagtaggt 36248136  T
Q  101 gcaaacagcaaacagctaagaattccaacaacaaaagaaaagggccaagagaggatccattgggctaaggggtggaccggttttgatctggttcggttca 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  36248135 gcaaacagcaaacagctaagaattccagcaacaaaagaaaagggccaagagaggatccattgggctaaagggtgaaccagttttggtctggttcggttca 36248036  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 6031644 - 6031612
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  6031644 ctggttcggttcaggagaaccgaaccggttcag 6031612  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 18434122 - 18434090
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  18434122 ctggttcggttcaggagaaccgaaccggttcag 18434090  T

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Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 38412173 - 38411974
Alignment:
Q  1 gatgctaaacaaaaatatgaaaacgataaaagaggttagagataatgcaatagactttaaaacaatagaaggtaggggtgcggtaatggaaatggtaggt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  38412173 gatgctaaacaaaaatatgaaaacgataaaagaggttagaaataatgcaatagactttaaaacaatagaaggtaagggtgcagtaatggaaatagtaggt 38412074  T
Q  101 gcaaacagcaaacagctaagaattccaacaacaaaagaaaagggccaagagaggatccattgggctaaggggtggaccggttttgatctggttcggttca 200  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  38412073 gcaaacagcaaacagctaagaattccagcagcaaaagaaaagggccaagagaggatccattgggctagggggtgaaccggttttgatttggttcggttca 38411974  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 4850575 - 4850543
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  4850575 ctggttcggttcaggagaaccgaaccggttcag 4850543  T

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Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 13464016 - 13463916
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcagaacaaacatatatatgtggtgtagggttctttttgttcat-ttttaacataaatttctctctctctg 286  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  13464016 ctggtttggttcaggagaaccgaaccggttcagaacaa-catatatatgtggtgtagggttctttttgttcattttttaacataaatttctctctctatg 13463918  T
Q  287 ct 288  Q
    ||    
T  13463917 ct 13463916  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 13464227 - 13464121
Alignment:
Q  1 gatgctaaacaaaaatatgaaaacgataaaagaggttagagataatgcaatagactttaaaacaatagaaggtaggggtgcggtaatggaaatggtaggt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |||| ||| |||| ||||| ||||||||||| ||||||    
T  13464227 gatgctaaacaaaaatatgaaaatgataaaagaggttagaaataatgcaatacactttaaagcaatggaaagtagtggtgcagtaatggaaatagtaggt 13464128  T
Q  101 gcaaaca 107  Q
    |||||||    
T  13464127 gcaaaca 13464121  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 22839094 - 22839126
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  22839094 ctggttcggttcaggagaaccgaaccggttcag 22839126  T

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Target: scaffold1120 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 820 - 668
Alignment:
Q  1 gatgctaaacaaaaatatgaaaacgataaaagaggttagagataatgcaatagactttaaaacaatagaaggtaggggtgcggtaatggaaatggtaggt 100  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| ||||| | | | ||| ||||| ||| |||| ||| | ||| ||||||| ||||||    
T  820 gatgctaaacaaaaatatgaaaatgataaaagaggttagaaatattgcaacaaattataacacaatggaatgtagcggtacagtagtggaaatagtaggt 721  T
Q  101 gcaaacagcaaacagctaagaattccaacaacaaaagaaaagggccaagagag 153  Q
    |||||||||||||||| || | ||||| |||||||  ||| ||||| ||||||    
T  720 gcaaacagcaaacagcaaaaagttccagcaacaaagaaaatgggccgagagag 668  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 19170158 - 19170087
Alignment:
Q  205 aaccgaaccggttcagaacaaacatatatat--gtggtgtagggttctttttgttcatttttaacataaattt 275  Q
    |||||||||||||| ||| | ||||||||||  || ||||||||||||||||||||||||| | |||||||||    
T  19170158 aaccgaaccggttc-gaaaagacatatatataggttgtgtagggttctttttgttcattttcagcataaattt 19170087  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 18964477 - 18964509
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  18964477 ctggttcggttcaggagaaccgaaccggttcag 18964509  T

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Target: scaffold1855 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 492 - 460
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  492 ctggttcggttcaggagaaccgaaccggttcag 460  T

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Target: scaffold0362 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 3645 - 3677
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  3645 ctggttcggttcaggagaaccgaaccggttcag 3677  T

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Target: scaffold0077 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 799 - 767
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  799 ctggttcggttcaggagaaccgaaccggttcag 767  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 25676712 - 25676744
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  25676712 ctggttcggttcaggagaaccgaaccggttcag 25676744  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 15578355 - 15578387
Alignment:
Q  188 ctggttcggttcaggaaaaccgaaccggttcag 220  Q
    |||||||||||||||| ||||||||||||||||    
T  15578355 ctggttcggttcaggagaaccgaaccggttcag 15578387  T

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