View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_18 (Length: 286)
Name: NF12501_low_18
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 43407754 - 43408008
Alignment:
| Q |
14 |
ttcactgttaggctcttaaaactnnnnnnntattcaaagcaaaatggataagaaaagacataaaagctaagtagctactatatggccaatatctgtactt |
113 |
Q |
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| T |
43407754 |
ttcattgttaggctcttaaaactaaaaaaatattcaaagcaaaatggataagaaaagacataaaagctaagtagctattatatggccaatatctgtactt |
43407853 |
T |
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| Q |
114 |
cttatgattcatgactcatgagtagggaatgatagacattttcatcttacaaaaaagtcttgctctagcatctgcaaaccacatgctaaccaaatatgca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407854 |
cttatgattcatgactcatgagtagggaatgatagacattttcatcttacaaaaaagtcttgctctagcatctgcaaaccacatgctaaccaaatatgca |
43407953 |
T |
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| Q |
214 |
acattataaactgtaaagtaaaagtgaacagcaatgtgttccataatgttatggg |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43407954 |
acattataaactgtaaagtaaaagtgaacagcaatgtgttccataatgttatggg |
43408008 |
T |
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