View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12501_low_2 (Length: 646)

Name: NF12501_low_2
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12501_low_2
NF12501_low_2
[»] chr7 (2 HSPs)
chr7 (1-640)||(33790559-33791189)
chr7 (500-614)||(33764098-33764212)


Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Original strand, 33790559 - 33791189
Alignment:
Q  1 tcatttaaagagcaccttccataaagaactgttttatatttttactttctttttaaatattattttagagnnnnnnnn-tcacatttatattcttccatt 99  Q
    |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||         |||||||||||||||||||||    
T  33790559 tcatttaaagagaaccttccataaaaaactgttttatatttttaatttctttttaaatattattttagagaaaaaaaaatcacatttatattcttccatt 33790658  T
Q  100 tcgcggacagtattcttcctaaataataacattgctcttagataaatatatatttggtccatttttaattgttcttgtcatataannnnnnnaatgactt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  33790659 tcgcggacagtattcttcctaaataataacattgctcttagataaatatatatttggtccatttttaattgttcttgtcatataatttttttaatgactt 33790758  T
Q  200 cattccttnnnnnnngtataactcgttcggtcttttatttcacaatgaataatggtgaccacatcaattgcatattcatcataatttttaggaagctgca 299  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||    
T  33790759 cattccttaaaaaaagtataactcgttcggtcttttatttcacaatgaataatggtgaccacatcaattgcatatt----------tttaggcagctgca 33790848  T
Q  300 tatttatcttactctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttaatttcaggggtgtgacgcatccatattaa 399  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33790849 tatttatcttactctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcaggggtgtgacgcatccatattaa 33790948  T
Q  400 tagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaa 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33790949 tagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaa 33791048  T
Q  500 tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33791049 tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacagga 33791148  T
Q  600 agacgtgatggattagtatcaactgttaatgatgtccatct 640  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  33791149 agacgtgatggattagtatcaactgttaatgatgtacatct 33791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 614
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
Q  500 tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga 599  Q
    ||||||||||||||| |||||||||||||||||  || || | || ||||||||| | || | |||| | || |||||||  |||||| |||||||||||    
T  33764212 tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga 33764113  T
Q  600 agacgtgatggatta 614  Q
    |||||||| ||||||    
T  33764112 agacgtgacggatta 33764098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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