View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_21 (Length: 275)
Name: NF12501_low_21
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 53788111 - 53788241
Alignment:
| Q |
23 |
cgttaaattcatttgcaaatgcttgttgggaaaatcaactg-ttccattatttgagtatttgaataattttctttccaatatttaatcacttccagcatc |
121 |
Q |
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| T |
53788111 |
cgttaaattcatttgcaaatgcttgttgggaaaatcaaccggttccattatttgagtattgcaataatttttttcccaatatttaatcacttccagcatc |
53788210 |
T |
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| Q |
122 |
ttgattcaatttgacattctcttccattaca |
152 |
Q |
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| T |
53788211 |
ttgattcaatttaacattctcttctattaca |
53788241 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 53788240 - 53788300
Alignment:
| Q |
201 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtg |
261 |
Q |
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| T |
53788240 |
cataaatccatggaaatacattagtattatttgctagtaagtactcggttgtattgcagtg |
53788300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 5273172 - 5273237
Alignment:
| Q |
107 |
atcacttccagcatcttgattcaatttgacattctcttccattacaatctcgttcaggggtggaac |
172 |
Q |
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| T |
5273172 |
atcacttgcagaatcttcattcattctcacattctcttccattacaatctcattaagggatggaac |
5273237 |
T |
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