View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_24 (Length: 233)
Name: NF12501_low_24
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 18076867 - 18077072
Alignment:
| Q |
13 |
cacagagtcacatatatagtgaaaatcaaagtcacactcactgtcccatacccagaggatgatcgagaaacacagcctactttgaatgttggcgcccaaa |
112 |
Q |
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| T |
18076867 |
cacatagtcacatatatagtgaaaatcaaagtcacactcacggtcccatacccagaggatgatcgagaaacacagcctactttgaatgttggcgcccaaa |
18076966 |
T |
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| Q |
113 |
cggtaccgtcagagggcgatgacgtggcacatgctatcgatgttagttctgaatcagcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagc |
212 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18076967 |
cggtaccgtcagagggagatgacttggcacatgctatcgatgttagttctgaatcagcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagc |
18077066 |
T |
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| Q |
213 |
tgttga |
218 |
Q |
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|||||| |
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| T |
18077067 |
tgttga |
18077072 |
T |
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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 51474279 - 51474379
Alignment:
| Q |
114 |
ggtaccgtcagagggcgatgacgtggcacatgctatcgatgttagttctgaatcagcgtcgttgaacgacggtgaaggtgatgatgtggcggcagcagct |
213 |
Q |
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|||||| | |||||| |||||| ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
51474279 |
ggtaccatgagagggtgatgacatggcacaccctatcgatgttagttctgaaacagtgtcgttgaatgacggtgaaggtgatgatgtggcagcagcagct |
51474378 |
T |
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| Q |
214 |
g |
214 |
Q |
| |
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| |
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| T |
51474379 |
g |
51474379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 51454178 - 51454218
Alignment:
| Q |
13 |
cacagagtcacatatatagtgaaaatcaaagtcacactcac |
53 |
Q |
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| T |
51454178 |
cacacagtcacttatatagtgaaaatcaaagtcacactcac |
51454218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 51454261 - 51454397
Alignment:
| Q |
78 |
agaaacacagcctactttgaatgttggcgcccaaacggtaccgtcagagggcgatgacgtggcacatgctatcgatgttagttctgaatcagcgtcgttg |
177 |
Q |
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||||||||| |||||| ||||||||||| |||||||||||| |||| | |||||||||||| ||| ||| |||| | ||||| | ||||||||| |
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| T |
51454261 |
agaaacacaacctactgccaatgttggcgcggaaacggtaccgttggaggatggtgacgtggcacaagctgtcggtgttggagctgaaacggcgtcgttg |
51454360 |
T |
|
| Q |
178 |
aacgacggtgaaggtgatgatgtggcggcagcagctg |
214 |
Q |
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|| || | |||| ||||||| |||| || |||||||| |
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| T |
51454361 |
aaggatgatgaacgtgatgacgtggtggaagcagctg |
51454397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 51478365 - 51478415
Alignment:
| Q |
18 |
agtcacatatatagtgaaaatcaaagtcacactcactgtcccatacccaga |
68 |
Q |
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| T |
51478365 |
agtcacgtatatagtgaaaatcaaagtcatactcaccgtcccggacccaga |
51478415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 202
Target Start/End: Original strand, 51478439 - 51478567
Alignment:
| Q |
74 |
atcgagaaacacagcctactttgaatgttggcgcccaaacggtaccgtcagagggcgatgacgtggcacatgctatcgatgttagttctgaatcagcgtc |
173 |
Q |
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||||||||||||| || ||| ||||||||||| ||| |||||||| |||| | ||| |||||||| ||||||| |||| | ||||| | ||||| |
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| T |
51478439 |
atcgagaaacacaacccactgccaatgttggcgcggaaatggtaccgttggaggatggtgatgtggcacaagctatcggtgttggagctgaaacggcgtc |
51478538 |
T |
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| Q |
174 |
gttgaacgacggtgaaggtgatgatgtgg |
202 |
Q |
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|||||| |||| |||| ||||||| |||| |
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| T |
51478539 |
gttgaaggacgatgaacgtgatgacgtgg |
51478567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 42431657 - 42431621
Alignment:
| Q |
21 |
cacatatatagtgaaaatcaaagtcacactcactgtc |
57 |
Q |
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||||||||| |||||||||||||||||||||| |||| |
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| T |
42431657 |
cacatatattgtgaaaatcaaagtcacactcagtgtc |
42431621 |
T |
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