View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_3 (Length: 621)
Name: NF12501_low_3
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Original strand, 36391125 - 36391704
Alignment:
| Q |
1 |
agtggcagtttgactaagagaatatttaattaggttatatgtttttgggaccaagttttgttcactaccttaattttcatacttaataaaaatgacgtga |
100 |
Q |
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| T |
36391125 |
agtggcagtttgactaagagaatatttaattaggttatatgtttttgggaccaagttttgttcactaccttaattttcatacttaataaaaatgacgtga |
36391224 |
T |
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| Q |
101 |
catattataaactagtattatatccgtgataagcacgagcgattttagtcctatttaaaagagagaatgttgtgacgta----------gttacatttta |
190 |
Q |
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| T |
36391225 |
catattataaactagtattatatccgtgataagcacgagcgattttagtcctatttaaaagagagaatgttgtgacgtatttagtgttagttacatttta |
36391324 |
T |
|
| Q |
191 |
atattgaataaattaatattacatatagggaaactaataagtgagaaaattcttataa-tgttttaaattatttcgttaagatatggtatcatttttact |
289 |
Q |
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| T |
36391325 |
atattgaataaattaagattacatatagggaaactaataagtgagaaaactcgtataaatgttttaaattatttcgttaagatgtggtatcatttttact |
36391424 |
T |
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| Q |
290 |
tagatgttgcttgtccaattgatcgatccataccattgttaacttctctaggaagttcaacaatggaagcatagcccggttcgacttaatgggggaaggg |
389 |
Q |
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| T |
36391425 |
tagatgttgcttgtccaattgatcgattcacaccattgttaacttctccaggaagttcaacaatggaagcatagcccggttcgacttagtgggggaaggg |
36391524 |
T |
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| Q |
390 |
taagtggttcttagtggtaaatcacggatgcggagagtcttatatttgagggagaaaatttaatgcgt-aagtgtgagttaatgttctacattggataca |
488 |
Q |
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| T |
36391525 |
taagtggttcttagtggtagatcacgtatgcggagagtcttatacttgaaggagaaaatttaatgcgtcaagtgtgggttaatgttctacattagatcca |
36391624 |
T |
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| Q |
489 |
agagtatatgttgagaaacacataggatataagacac--ataactaatgccttaaagtttagggtgaatttgtattgtcaa |
567 |
Q |
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| T |
36391625 |
agagtatatgttgagaaacacgtaggatataagacacatataactaatgccttaaa-tttagggtgaatttgtagtgtcaa |
36391704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 536 - 621
Target Start/End: Original strand, 36391713 - 36391798
Alignment:
| Q |
536 |
ccttaaagtttagggtgaatttgtattgtcaatataactttgtttgatttctcttagtgtaatagatgatcaaacttgatgtagga |
621 |
Q |
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| T |
36391713 |
ccttaaagtttagggtgaatttgtattgtcaatatcactttgtttgatttttcttagtgtaatagatgatcaaacttgatgtagga |
36391798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 348 - 523
Target Start/End: Complemental strand, 5786093 - 5785917
Alignment:
| Q |
348 |
aacaatggaagcatagcccggttcgacttaatgggggaagggtaagtggttcttagtggtaaatcacggatgcggagagtcttatatttgagggagaaaa |
447 |
Q |
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| T |
5786093 |
aacaatggtagcatagcccggttcgactttgtgggggatgggtgagtggttcctagtggtagatcatggatgtggagagtctcatactgaagggagataa |
5785994 |
T |
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| Q |
448 |
tttaatgcgt-aagtgtgagttaatgttctacattggatacaagagtatatgttgagaaacacataggatataagac |
523 |
Q |
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| T |
5785993 |
gttaatgtgtcaagtgtgagttacagttcaacatttgatgcaagagtttatgttgagaaacacataggtgataagac |
5785917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 621
Target Start/End: Complemental strand, 5785895 - 5785824
Alignment:
| Q |
549 |
ggtgaatttgtattgtcaatataactttgtttgatttctcttagtgtaatagatgatcaaacttgatgtagga |
621 |
Q |
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| T |
5785895 |
ggtgaatttgtagtgtcaatctcactta-tttggtttgtcttagtctaatggatgatcaaacttaatgtagga |
5785824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 508
Target Start/End: Original strand, 431996 - 432043
Alignment:
| Q |
461 |
tgtgagttaatgttctacattggatacaagagtatatgttgagaaaca |
508 |
Q |
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| T |
431996 |
tgtgagttaaaattcgacattggatgcaagagtatatgttgagaaaca |
432043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 621
Target Start/End: Complemental strand, 19223238 - 19223200
Alignment:
| Q |
584 |
ttctcttagtgtaata-gatgatcaaacttgatgtagga |
621 |
Q |
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| T |
19223238 |
ttctcttagtgtaatatgatgatcaaacttgatgtagga |
19223200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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