View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_4 (Length: 553)
Name: NF12501_low_4
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 448
Target Start/End: Original strand, 33789689 - 33790139
Alignment:
| Q |
4 |
atgcacttccatgattgctttgttagagtaagctccaaactaacctaattaatcatatcattatgaaaatggatcctctgaggaaacattacaaaaaatt |
103 |
Q |
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| T |
33789689 |
atgcacttccatgattgctttgtcagagtaagctccaaactaacctaattaatcatatcattatgaaaatggatcctctgagaaaacattacaaaaattt |
33789788 |
T |
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| Q |
104 |
tgaccattaatctttacattatcaataatgtagagatcaatggtcaaaatctccacgttatttttc-nnnnnnntcatttgagag------aatccactc |
196 |
Q |
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| T |
33789789 |
tgaccattaatctctacattatcaataatgtagagatcaatggtcaagatctccacgttatttttcaaaaaaattcattttagagaatattaatccactc |
33789888 |
T |
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| Q |
197 |
caatgatatatatacattagttttactctctttccaaacaattatttgtccttaaatttgagatgatctacaaaatatatcatacatgaatgttttcttt |
296 |
Q |
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| T |
33789889 |
caatg--atatatacattagttttactctctttccaaacaattatttgtccctaaatttgagatgatctacaaaatatttcatacatgaatgttttcttt |
33789986 |
T |
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| Q |
297 |
gcaaatatatttaatttaccagttaaaatgcaagttattttttctttcttatgatattaataa-nnnnnnnnaagaagtatgatattaataatttataaa |
395 |
Q |
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| T |
33789987 |
gaaaatataattaatttaccagttaaaatgcaagttattttttctttcttatgatattaataatttttttttaagaagtatgatattaataatttataaa |
33790086 |
T |
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| Q |
396 |
aatacatatgtaaaactgacacatatcatcaagaaattcatcactccaacaag |
448 |
Q |
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| T |
33790087 |
aatacatatgtaaaagtgacacatatcatcaagaaattcatcactccaacaag |
33790139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 33789835 - 33789785
Alignment:
| Q |
103 |
ttgaccattaatctttacattatcaataatgtagagatcaatggtcaaaat |
153 |
Q |
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| T |
33789835 |
ttgaccattgatctctacattattgataatgtagagattaatggtcaaaat |
33789785 |
T |
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