View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12501_low_5 (Length: 551)

Name: NF12501_low_5
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12501_low_5
NF12501_low_5
[»] chr3 (1 HSPs)
chr3 (11-537)||(1506742-1507268)
[»] chr8 (7 HSPs)
chr8 (11-434)||(3012515-3012935)
chr8 (33-435)||(2929866-2930265)
chr8 (24-417)||(2946495-2946885)
chr8 (32-537)||(37795345-37795844)
chr8 (36-456)||(2920467-2920884)
chr8 (480-537)||(3012430-3012487)
chr8 (462-521)||(2930277-2930333)
[»] chr6 (2 HSPs)
chr6 (11-157)||(4916473-4916619)
chr6 (277-537)||(4916209-4916463)
[»] chr2 (1 HSPs)
chr2 (67-435)||(28024387-28024740)


Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Complemental strand, 1507268 - 1506742
Alignment:
Q  11 cagagagagagttaaggtggtcggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaatttt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1507268 cagagagagagttaaggtggtcggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaatttt 1507169  T
Q  111 aggtccatagaaatactcattgataaaaggcccatcggttggattcaagaaagagctccactttgaatcaaagaacaaacatttgtctggaggcctgtaa 210  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1507168 aggtccgtagaaatactcattgataaaaggcccatcggttggattcaagaaagagctccactttgaatcaaagaacaaacatttgtctggaggcctataa 1507069  T
Q  211 ccggcatgtgtcttcaaccaattttgggacaatcgttttctgaaatcatcatcttcaattctaggcttgtgatcttgcattagaagtcggatccattcca 310  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||||    
T  1507068 ccagcatgtgtcttcaaccaattttgggacattcgttttctgaaatcatcatcttcaattgtaggcgtgtgattttgcattagaagttggatccattcca 1506969  T
Q  311 gcaaagagaacacactttcaggagtaatagtggaaggattggaaggaaaactcaaacattcaggtaaaaacctcgctccatctttcaattcagtaacaac 410  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1506968 gcaaagaaaacacactttcaggagtaatggtggaaggattggaaggaaaactcaaacattcaggcaaaaacctcgctccatctttcaattcagtaacaac 1506869  T
Q  411 accaatgctctccagctcttccttgaactcatatattcccataccagactgtttgtcactattataatgaatgaaagggagacaggttatggaagatatt 510  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  1506868 accaatgctctccagctcttccttgtactcgtatattcccataccagactgtttgtcactgttataatgaatgaaagggagacaagttatggaagatatt 1506769  T
Q  511 gattcccactctggatcatataaaatg 537  Q
    ||||||||||||||| |||||||||||    
T  1506768 gattcccactctggaccatataaaatg 1506742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 3012935 - 3012515
Alignment:
Q  11 cagagagagagttaaggtggtcggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaatttt 110  Q
    |||||||||||| ||||||   ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  3012935 cagagagagagtcaaggtgactggcaagcaaggagcaacccttctcaacttcactagtgacccctattgcattcagttctttctggaaaattgcaatttt 3012836  T
Q  111 aggtccatagaaatactcattgataaaaggcccatcggttggattcaagaaagagctccactttgaatcaaagaacaaacatttgtctggaggcctgtaa 210  Q
    ||||||||| || | |||||  |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||  | |||    
T  3012835 aggtccataaaatttctcatcaataaaaggcccatcagttggattcaagaaagaactccacttggaatcaaacaacaaacacttctctggaggtttataa 3012736  T
Q  211 ccggcatgtgtcttcaaccaattttgggacaatcgttttctgaaatcatcatcttcaattctaggcttgtgatcttgcattagaagtcggatccattcca 310  Q
    || |||| |||||||||||||||||  ||||||| |||||||||||   ||||||||||| ||  ||||| |||| ||||||||||| |||| | |||||    
T  3012735 ccagcatttgtcttcaaccaattttttgacaatctttttctgaaat---catcttcaattgtattcttgttatctagcattagaagttggatgctttcca 3012639  T
Q  311 gcaaagagaacacactttcaggagtaatagtggaaggattggaaggaaaactcaaacattcaggtaaaaacctcgctccatctttcaattcagtaacaac 410  Q
    ||||||  ||||||||||||||| ||||  |||| ||||| ||||||||  ||| ||||||||  | ||| |||   || ||||||||||||||||||||    
T  3012638 gcaaagcaaacacactttcaggactaatgatggagggatttgaaggaaacatcagacattcagccacaaaactcaacccgtctttcaattcagtaacaac 3012539  T
Q  411 accaatgctctccagctcttcctt 434  Q
    ||||||||||| ||||||| ||||    
T  3012538 accaatgctcttcagctctgcctt 3012515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 33 - 435
Target Start/End: Original strand, 2929866 - 2930265
Alignment:
Q  33 ggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaattttaggtccatagaaatactcattg 132  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||| || ||||||||||||||| ||| |||||| || |||||||| |||| |||||      
T  2929866 ggcaagcaaggagcaccccttttcaacttcactaatgacccctatcgcgttgagttctttctggaaaaatgcaatatttggtccataaaaattctcatct 2929965  T
Q  133 ataaaaggcccatcggttggattcaagaaagagctccactttgaatcaaagaacaaacatttgtctggaggcctgtaaccggcatgtgtcttcaaccaat 232  Q
    |||||||| ||||| ||||||||||| ||||| |||||||| ||| |||| |||||||| || ||||||| ||| ||||| |||||||||||||||||||    
T  2929966 ataaaaggtccatcagttggattcaataaagaactccacttggaaccaaacaacaaacacttctctggagacctataaccagcatgtgtcttcaaccaat 2930065  T
Q  233 tttgggacaatcgttttctgaaatcatcatcttcaattctaggcttgtgatcttgcattagaagtcggatccattccagcaaagagaacacactttcagg 332  Q
    |||||||||||| |  ||||||||||||   ||||| |  | | |||| |||||| ||||||||| |||| |||||||  ||||| ||||||||||||||    
T  2930066 tttgggacaatcttcctctgaaatcatc---ttcaaatgcaaggttgttatcttgtattagaagttggatgcattccaataaagaaaacacactttcagg 2930162  T
Q  333 agtaatagtggaaggattggaaggaaaactcaaacattcaggtaaaaacctcgctccatctttcaattcagtaacaacaccaatgctctccagctcttcc 432  Q
    | |||| ||||| ||||| ||||||||| ||| ||||||||  | |||||||   || ||||||||||||||||||||||||||||||| ||||||| ||    
T  2930163 actaatggtggagggatttgaaggaaaattcagacattcagccacaaacctcaacccgtctttcaattcagtaacaacaccaatgctcttcagctctgcc 2930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 24 - 417
Target Start/End: Original strand, 2946495 - 2946885
Alignment:
Q  24 aaggtggtcggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaattttaggtccatagaaa 123  Q
    |||||| | |||||||||||||||||| ||||||||||||||| |||||||||| |||  ||||||||| |||||||   |||||| ||||||||| |||    
T  2946495 aaggtgattggcaagcaaagagcaccctttctcaacttcactaatgacccctatggcagcgagttctttatggtaaaggacaatttcaggtccataaaaa 2946594  T
Q  124 tactcattgataaaaggcccatcggttggattcaagaaagagctccactttgaatcaaagaacaaacatttgtctggaggcctgtaaccggcatgtgtct 223  Q
      |||||  |||||||||||||  |||||||| |||||||| |||||||| |||| ||| |||| | | || ||||||||||| ||||| ||||||||||    
T  2946595 ctctcatcaataaaaggcccattagttggattaaagaaagaactccacttggaattaaacaacagagacttctctggaggcctataaccagcatgtgtct 2946694  T
Q  224 tcaaccaattttgggacaatcgttttctgaaatcatcatcttcaattctaggcttgtgatcttgcattagaagtcggatccattccagcaaagagaacac 323  Q
    ||||||| |||| |||||||| |||| ||||   |||||||||||    |  ||| | ||||||||||||||||||||| ||||||| ||||||  ||||    
T  2946695 tcaaccattttttggacaatctttttttgaa---atcatcttcaagaaaaaacttcttatcttgcattagaagtcggatgcattccatcaaagaacacac 2946791  T
Q  324 actttcaggagtaatagtggaaggattggaaggaaaactcaaacattcaggtaaaaacctcgctccatctttcaattcagtaacaacaccaatg 417  Q
    ||||||||||||||||||||| ||||||||||||||| ||| | ||||||||| |||  || ||||||||||||||||||||||||||||||||    
T  2946792 actttcaggagtaatagtggatggattggaaggaaaattcagagattcaggtacaaatgtcactccatctttcaattcagtaacaacaccaatg 2946885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 32 - 537
Target Start/End: Original strand, 37795345 - 37795844
Alignment:
Q  32 cggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaattttaggtccatagaaatactcatt 131  Q
    |||||||||| ||||| || ||||| |  ||| | ||||| || |||||||||| |||||||||| ||  ||| |||||||||||||| ||||   |||     
T  37795345 cggcaagcaaggagcatcctttctctaggtcagtggtgacaccgattgcattgaattctttctggaaagatgctattttaggtccataaaaatttgcatc 37795444  T
Q  132 gataaaaggcccatcggttggattcaagaaagagctccactttgaatcaaagaacaaacatttgtctggaggcctgtaaccggcatgtgtcttcaaccaa 231  Q
     |||||||||||||| |||||||| |||||||| |||||||| |||| ||| | ||||||  |  |||||||||| ||||| ||||||||||||||||||    
T  37795445 aataaaaggcccatcagttggattaaagaaagaactccacttggaattaaacagcaaacacatccctggaggcctataaccagcatgtgtcttcaaccaa 37795544  T
Q  232 ttttgggacaatcgttttctgaaatcatcatcttcaattctaggcttgtgatcttgcat-tagaagtcggatccattccagcaaagagaacacactttca 330  Q
    |||  ||||||||  |||||||| ||||||   |||||   | |||| || |||| ||| || |  | |||| |||||||||||||| ||||||||||||    
T  37795545 tttctggacaatctctttctgaactcatca---tcaatggaaagcttatgctctt-catataaactttggatgcattccagcaaagaaaacacactttca 37795640  T
Q  331 ggagtaatagtggaaggattggaaggaaaactcaaacattcaggtaaaaacctcgctccatctttcaattcagtaacaacaccaatgctctccagctctt 430  Q
    |||||||| ||||| ||||  ||||||||| ||| ||||| ||| | ||||||| | |||| ||||||||||||||||||||||| | ||| ||| ||||    
T  37795641 ggagtaatggtggagggatctgaaggaaaattcagacatttaggcacaaacctcacaccatgtttcaattcagtaacaacaccaaggttcttcagttctt 37795740  T
Q  431 ccttgaactcatatattcccataccagactgtttgtcactattataatgaatgaaagggagacaggttatggaagatattgattcccactctggatcata 530  Q
    ||||| | |||| |||  || ||||| |   ||||||||   | |  | ||||||||||||||| || || |||||||| |||| |||||| ||| ||||    
T  37795741 ccttgtattcatgtatagccgtaccataaaatttgtcac---tgtcgtcaatgaaagggagacaagtaatcgaagatatagatttccactccggaccata 37795837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 36 - 456
Target Start/End: Original strand, 2920467 - 2920884
Alignment:
Q  36 aagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaattttaggtccatagaaatactcattgata 135  Q
    |||||| |||||||| ||||| | |||| ||||||| |||||||||  ||||||||||||| ||  ||| || |||  |||||| ||||  ||||  |||    
T  2920467 aagcaaggagcaccctttctctagttcaatagtgactcctattgcaccgagttctttctggaaagatgctatcttaattccataaaaattttcatcaata 2920566  T
Q  136 aaaggcccatcggttggattcaagaaagagctccactttgaatcaaagaacaaacatttgtctggaggcctgtaaccggcatgtgtcttcaaccaatttt 235  Q
    ||||| || || |||||||| |||||||| |||||||| |||||||| ||||||||  | ||||||||||| ||||| |||  |||||| |||||||||     
T  2920567 aaaggtccgtcagttggattaaagaaagaactccacttggaatcaaacaacaaacacatctctggaggcctataaccagcacttgtctttaaccaatttc 2920666  T
Q  236 gggacaatcgttttctgaaatcatcatcttcaattctaggcttgtgatcttgcattagaagtcggatccattccagcaaagagaacacactttcaggagt 335  Q
     ||||| |   || ||||| |||||   || |||   | |  | || |||||||  |||  |||||| |||| ||||||||| |||||||| |||||| |    
T  2920667 tggacagtttcttgctgaactcatc---tttaatagaaagactatgctcttgcacaagacttcggatgcatttcagcaaagaaaacacactgtcaggact 2920763  T
Q  336 aatagtggaaggattggaaggaaaactcaaacattcaggtaaaaacctcgctccatctttcaattcagtaacaacaccaatgctctccagctcttccttg 435  Q
    ||| ||||| ||||  ||||||||| ||||||||  ||| | ||||||| |||||| ||||||||||||||||||||||||||||| ||| ||||| |||    
T  2920764 aatggtggagggatctgaaggaaaattcaaacatgtaggcacaaacctcactccatttttcaattcagtaacaacaccaatgctcttcagatcttctttg 2920863  T
Q  436 aactcatatattcccatacca 456  Q
     | |||| |||  ||||||||    
T  2920864 tattcatgtatagccatacca 2920884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 480 - 537
Target Start/End: Complemental strand, 3012487 - 3012430
Alignment:
Q  480 aatgaaagggagacaggttatggaagatattgattcccactctggatcatataaaatg 537  Q
    ||||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||||    
T  3012487 aatgaaagggagacaagttatagaagatattgatttccactccggaccatataaaatg 3012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 521
Target Start/End: Original strand, 2930277 - 2930333
Alignment:
Q  462 tttgtcactattataatgaatgaaagggagacaggttatggaagatattgattcccactc 521  Q
    |||||||||||   ||| ||||||||||||||  ||||| ||||||||||||||||||||    
T  2930277 tttgtcactat---aatcaatgaaagggagacgagttatagaagatattgattcccactc 2930333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 4916619 - 4916473
Alignment:
Q  11 cagagagagagttaaggtggtcggcaagcaaagagcaccccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaatttt 110  Q
    |||||||||| | ||||||   ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||  |||||||||    
T  4916619 cagagagagaatcaaggtgactggcaagcaaggagcaccccttctcaacttcaccaatgacccctattgcattgagttctttctggaaagatgcaatttt 4916520  T
Q  111 aggtccatagaaatactcattgataaaaggcccatcggttggattca 157  Q
    |||||||||  ||| |||||  |||||||| ||||| ||||||||||    
T  4916519 aggtccataccaattctcatcaataaaaggtccatcagttggattca 4916473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 277 - 537
Target Start/End: Complemental strand, 4916463 - 4916209
Alignment:
Q  277 ttgtgatcttgcattagaagtcggatccattccagcaaagagaacacactttcaggagtaatagtggaaggattggaaggaaaactcaaacattcaggta 376  Q
    ||||||||||||||||||| |||||| ||| |||| ||||| |||||||||| |||  |||||||||| || || ||||||||  | | |||||| |  |    
T  4916463 ttgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggaca 4916364  T
Q  377 aaaacctcgctccatctttcaattcagtaacaacaccaatgctctccagctcttccttgaactcatatattcccataccagactgtttgtcactattata 476  Q
     |||| || ||||||||||||||| ||||||||| |||| ||||| ||||||| ||||| ||||||  |||| |||||||    ||||     ||   ||    
T  4916363 caaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcatacca---cgttt---cgtaccgta 4916270  T
Q  477 atgaatgaaagggagacaggttatggaagatattgattcccactctggatcatataaaatg 537  Q
    || ||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||    
T  4916269 atcaatgaaagggagacaagttatagaagatattgattcccactccggaccatataaaatg 4916209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 67 - 435
Target Start/End: Original strand, 28024387 - 28024740
Alignment:
Q  67 gtgacccctattgcattgagttctttctggtaaattgcaattttaggtccatagaaatactcattgataaaaggcccatcggttggattcaagaaagagc 166  Q
    ||||| ||||||||||||| |||||||||| ||  ||| ||| |||| ||||| ||||   |||  |  ||||||||||| ||| |||| |||||||| |    
T  28024387 gtgacacctattgcattgaattctttctggaaagatgctattgtaggaccataaaaatttgcatcaacgaaaggcccatcagtttgattaaagaaagaac 28024486  T
Q  167 tccactttgaatcaaagaacaaacatttgtctggaggcctgtaaccggcatgtgtcttcaaccaattttgggacaatcgttttctgaaatcatcatcttc 266  Q
    ||||||| |||| ||| | ||||||  | ||||||||||| ||||| ||||| ||||||||||||||   ||||||||  || ||||| ||||||||       
T  28024487 tccacttggaattaaacagcaaacacatctctggaggcctataaccagcatgcgtcttcaaccaattcctggacaatctcttcctgaactcatcatc--- 28024583  T
Q  267 aattctaggcttgtgatcttgcattagaagtcggatccattccagcaaagagaacacactttcaggagtaatagtggaaggattggaaggaaaactcaaa 366  Q
    |||   | |||| ||  |||          |||||| |||||||||||||| |||||||||||||||||||| ||||  ||||  ||||||||| ||| |    
T  28024584 aatggaaagcttatg--ctt----------tcggatgcattccagcaaagaaaacacactttcaggagtaatggtggtgggatctgaaggaaaattcaga 28024671  T
Q  367 cattcaggtaaaaacctcgctccatctttcaattcagtaacaacaccaatgctctccagctcttccttg 435  Q
    |||||||| | ||| ||| |||||| |||  ||||||||||||||||| |||| | |||||| ||||||    
T  28024672 cattcaggcacaaatctcactccatgtttgtattcagtaacaacaccagtgcttttcagctcgtccttg 28024740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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