View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_7 (Length: 460)
Name: NF12501_low_7
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 43010478 - 43010750
Alignment:
| Q |
17 |
atttcaaaaatgcgcgtagagcatactttgagaaaacaaaaaatacattatttacaggttcattttttgaaagattacaggttcataaataccccttctt |
116 |
Q |
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| T |
43010478 |
atttcaaaaatgcgcgtagagcatactttgagaaaacaaaaaatacactatttataggttcattttttgaaagattacaggttcataaataccccttctt |
43010577 |
T |
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| Q |
117 |
tcctctcnnnnnnnnnnnntacccctcctcttagaaagaaactacaaggcacatacagatattgaatcataagtacatgtgaatatatacagatgaatcc |
216 |
Q |
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| T |
43010578 |
tcctctcaaaaaagaaaaatacccctcctcttagaaagaaactacaaggcacatacagatattgaatcataagtacatgtgaatatatacagatgaatcc |
43010677 |
T |
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| Q |
217 |
gatttcattaattactccacttaccattaagataattgctccgcttttcctctatactttgagcatcaattaa |
289 |
Q |
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| T |
43010678 |
gatttcattaattactccacttaccattaagataattgctccgcttttcctctatactttgagcatcaattaa |
43010750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 413
Target Start/End: Original strand, 43010773 - 43010831
Alignment:
| Q |
355 |
taatataaatcatttcaatttaatacaaaatggattgatgcataatatacatatgggtt |
413 |
Q |
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| T |
43010773 |
taatataaaccatttcaatttaatacaaaatggattgatgcataatatatatataggtt |
43010831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 43010737 - 43010779
Alignment:
| Q |
303 |
tgagcatcaattaattttatttcccctatcgttttctaatata |
345 |
Q |
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| T |
43010737 |
tgagcatcaattaattttatttcccctattgttttctaatata |
43010779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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