View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12501_low_8 (Length: 410)
Name: NF12501_low_8
Description: NF12501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12501_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 195 - 394
Target Start/End: Original strand, 29653611 - 29653810
Alignment:
| Q |
195 |
gcatgcttgagtaatcggatggactgttatgttttttctaattgcgttgatttttcttccattgttatttcacattttcctttagtcagctataattgtg |
294 |
Q |
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| T |
29653611 |
gcatgcttgagtaattggatggactgttatgtcttttctaattgcgttgatttttcttcctttgttatttcacattttcccttagtcagctatgattgtg |
29653710 |
T |
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| Q |
295 |
tttccatgctaacgttacaaaatttagctgttgtctcaaaatttaactatgactataactacgttttttcctcctcttctttccatgctaacgaattata |
394 |
Q |
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| T |
29653711 |
tttccatgctaacgttacaaaatttagctgttgtctcaaaatttaactatgactataactacgtttttttcttctctgctttccatgctaacgaattata |
29653810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 29653422 - 29653545
Alignment:
| Q |
4 |
gaagaacactattatgatgatgatgtttaccttaagatgtttttaaataatgaaatatataatgtctttgtttgattctgagtggtggaggtgtaaggtt |
103 |
Q |
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| T |
29653422 |
gaagaacactattatgatgatggtgtttatcttgagatgtttttaaataatgaaatat--aatgtctttgtttgattccgagtggttgaggtgtaaggtt |
29653519 |
T |
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| Q |
104 |
attatcttggagtgactttgaagcta |
129 |
Q |
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| T |
29653520 |
attttcttggagagactttgaagcta |
29653545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 29682794 - 29682836
Alignment:
| Q |
245 |
tttttcttccattgttatttcacattttcctttagtcagctat |
287 |
Q |
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| T |
29682794 |
tttttcttccattgttatttcacattttcccttagtcagctat |
29682836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 29681767 - 29681825
Alignment:
| Q |
4 |
gaagaacactattatgatgatgatgtttaccttaagatgtttttaaataatgaaatata |
62 |
Q |
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| T |
29681767 |
gaagaacactattatgatgatcatatttatcttgagatgtatttaaatgatgaaatata |
29681825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 29682878 - 29682919
Alignment:
| Q |
290 |
ttgtgtttccatgctaacgttacaaaatttagctgttgtctc |
331 |
Q |
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| T |
29682878 |
ttgtgttttcatgctaacgttacaaaatttagttgttgtctc |
29682919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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