View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12502_high_6 (Length: 270)

Name: NF12502_high_6
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12502_high_6
NF12502_high_6
[»] chr7 (7 HSPs)
chr7 (136-258)||(25058698-25058820)
chr7 (19-113)||(25058899-25058993)
chr7 (19-63)||(25063718-25063762)
chr7 (19-63)||(25084919-25084963)
chr7 (33-79)||(25109789-25109835)
chr7 (19-63)||(25073296-25073340)
chr7 (19-64)||(25090967-25091012)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 25058820 - 25058698
Alignment:
Q  136 tacataaaattcaatatttat-tcatgatcttgaatgttaagtttgacacaattcctaatgaaattgacagataaattcacccaagactcgccttatatt 234  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  25058820 tacataaaattcaacatttatctcatgatcttgaatgt-aagtttgacacaactcctaatgaaattgacagataaattcaccgaagactcgccttatatt 25058722  T
Q  235 cctcagttgtcctcccatcagtga 258  Q
    ||||||||||||||||||| ||||    
T  25058721 cctcagttgtcctcccatcggtga 25058698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 25058993 - 25058899
Alignment:
Q  19 atgtaccattggaggaatacaaagaaaatatgaggaagattgctaattatctaaaggtaaaatttgtcatactagaatttcattttcctatctta 113  Q
    |||||| ||||||||||||||   |||||||| | |||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||    
T  25058993 atgtacgattggaggaatacattcaaaatatgtgtaagattgctaattatctaaaggtaaaatttgtcatagttgagtttcattttcctatctta 25058899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 25063762 - 25063718
Alignment:
Q  19 atgtaccattggaggaatacaaagaaaatatgaggaagattgcta 63  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  25063762 atgtaccattggaggaatacatagaaaatatgaggaagattgcta 25063718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 25084963 - 25084919
Alignment:
Q  19 atgtaccattggaggaatacaaagaaaatatgaggaagattgcta 63  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  25084963 atgtaccattggaggaatacgtagaaaatatgaggaagattgcta 25084919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 25109835 - 25109789
Alignment:
Q  33 gaatacaaagaaaatatgaggaagattgctaattatctaaaggtaaa 79  Q
    ||||| |||||||||||||||||||||||||| || |||||||||||    
T  25109835 gaatataaagaaaatatgaggaagattgctaactacctaaaggtaaa 25109789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 25073340 - 25073296
Alignment:
Q  19 atgtaccattggaggaatacaaagaaaatatgaggaagattgcta 63  Q
    |||||||||||| |||||||| ||||||||||| |||||||||||    
T  25073340 atgtaccattgggggaatacatagaaaatatgaagaagattgcta 25073296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 25091012 - 25090967
Alignment:
Q  19 atgtaccattggaggaatacaaagaaaatatgaggaagattgctaa 64  Q
    ||||||||||||| ||||| |  |||||||||||||||||||||||    
T  25091012 atgtaccattggaagaatatattgaaaatatgaggaagattgctaa 25090967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University