View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12502_low_1 (Length: 501)
Name: NF12502_low_1
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12502_low_1 |
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| [»] chr8 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Complemental strand, 38121317 - 38120832
Alignment:
| Q |
16 |
ctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttgg |
115 |
Q |
| |
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|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |
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| T |
38121317 |
ctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcattacttgtcaatcgccgatcttgagaagcttccggttgg |
38121218 |
T |
|
| Q |
116 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtt |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
38121217 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagtt |
38121118 |
T |
|
| Q |
216 |
aaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatct |
315 |
Q |
| |
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||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121117 |
aaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatct |
38121018 |
T |
|
| Q |
316 |
taggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctct |
415 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
38121017 |
taggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggccacggaagaaacctgctctgctcc |
38120918 |
T |
|
| Q |
416 |
tgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
501 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38120917 |
tgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
38120832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 38608806 - 38609291
Alignment:
| Q |
16 |
ctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttgg |
115 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||| |
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| T |
38608806 |
ctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttgg |
38608905 |
T |
|
| Q |
116 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtt |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
38608906 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagtt |
38609005 |
T |
|
| Q |
216 |
aaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatct |
315 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38609006 |
aaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatat |
38609105 |
T |
|
| Q |
316 |
taggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctct |
415 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||| |||||| |||| | ||| ||| ||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
38609106 |
taggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctct |
38609205 |
T |
|
| Q |
416 |
tgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
501 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38609206 |
tgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
38609291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 38793589 - 38794074
Alignment:
| Q |
16 |
ctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttgg |
115 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||| |
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| T |
38793589 |
ctatattctccggttctcaatcgtacatcagcaatgtgcgattccatatcataccgaattattacttgtcgatcgccgatcttgagaagcttccagttgg |
38793688 |
T |
|
| Q |
116 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
38793689 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggcggaggagtgacatcagcgccgatgaggattaactatgtgagagtt |
38793788 |
T |
|
| Q |
216 |
aaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatct |
315 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38793789 |
aaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatat |
38793888 |
T |
|
| Q |
316 |
taggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctct |
415 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||| |||||| |||| | ||| ||| ||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
38793889 |
taggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggcgacggaagaaacctgctctgctct |
38793988 |
T |
|
| Q |
416 |
tgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
501 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38793989 |
tgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
38794074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 456 - 501
Target Start/End: Original strand, 34592844 - 34592889
Alignment:
| Q |
456 |
gcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
501 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||||||||||||||||| |
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| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattg |
34592889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Complemental strand, 28730891 - 28730406
Alignment:
| Q |
16 |
ctatattctctggctctcaatcgtacatcagcaatgtgcgattccatatcataccgaatcattacttgtctatcgctgatcttgaaaagcttccagttgg |
115 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||| |
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| T |
28730891 |
ctatattctccggttctcaatcgtatatcagcaatgtgcgattccatatcataccgaatcgttacttgtcaatcgccgatcttgagaagcttccagttgg |
28730792 |
T |
|
| Q |
116 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtggcatcagcgccaatgaggattaactatgtgagagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| || || |
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|
| T |
28730791 |
aactgctctgcctacattggagcgaggtcagccgcttctgatcactacttccggtggaggagtgacattagcaccgatgaggattaactatgttagggtg |
28730692 |
T |
|
| Q |
216 |
aaggttgctgacgtcattcgcaatgtgaagatagttgtgcacaacgtgtatttgccttttccgcatatcaatcctattgcggctgcttatgatactatct |
315 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28730691 |
aaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatcctattgcggatgcttatgatactatct |
28730592 |
T |
|
| Q |
316 |
taggaggtgaaggagcattggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgacggaagaatcctgctctgctct |
415 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
28730591 |
taggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattctgctggtcaggcgactgaagaaacctgctctgctct |
28730492 |
T |
|
| Q |
416 |
tgatggacgtggtgattgtgctgctgatgtcactgctgcagcaggtgtgtctcccatgcctcaggtcaagccaatggttgagattg |
501 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
28730491 |
tgatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatgtttgagattg |
28730406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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