View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12502_low_11 (Length: 249)
Name: NF12502_low_11
Description: NF12502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12502_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 21597731 - 21597927
Alignment:
| Q |
32 |
agcacagacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaaca |
131 |
Q |
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| T |
21597731 |
agcaccgacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattctaaggaatgaaaacgagccaccagcaaca |
21597830 |
T |
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| Q |
132 |
ggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcga |
228 |
Q |
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| T |
21597831 |
ggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcga |
21597927 |
T |
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Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 11987507 - 11987687
Alignment:
| Q |
44 |
agcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaacaggaacttcaacg |
143 |
Q |
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||||||||||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||| |||| || ||||| ||||| ||||||||||| |
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| T |
11987507 |
agcttcaaggagaatattcccggcagcaatgaaagcgaggaagtcaccgagttcgattcttaggaatcaaaacgaaccaccggcaacgggaacttcaact |
11987606 |
T |
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| Q |
144 |
gcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagca |
224 |
Q |
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| T |
11987607 |
gcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcggcgtaggagaggataatggaaggaccagca |
11987687 |
T |
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